Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 
[Viewing data for 'Whitfield-Thythy1' only. See combined data for IMP3]

Homo sapiens

Cyclebase periodic rank: 10,530



Analysis Results

[hide] [show]

Analysis Results of 'Whitfield-Thythy1'

P(per)
= 0.616
P(reg)
= 1.1866
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info imp3 [SPAC19D5.05c] Schizosaccharomyces pombe 2,282 uncertain 0.276 0.001
Click to View Chart Preview Click for Info IMP3 [YHR148W] Saccharomyces cerevisiae 4,180 uncertain 0.543 1.325
Click to View Chart Preview Click for Info F14F8_130 [AT5G15750] Arabidopsis thaliana 10,365 uncertain 1.885 0.158

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of IMP3 (from probeset IMAGE:365539).

Click to enlarge