Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Homo sapiens

Cyclebase periodic rank: 2,183



Gene Features:

[hide] [show]
Degradation Signals:
  1. PEST
siRNA Knockdown Phenotype:
  1. Increased G1 Population

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.0302
P(reg)
= 0.0235
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info PRDM5 [ENSG00000138738] Homo sapiens 3,113 uncertain 0.336 0.008
Click to View Chart Preview Click for Info PRDM4 [ENSG00000110851] Homo sapiens 8,628 uncertain 0.098 1.976
Click to View Chart Preview Click for Info PRDM12 [ENSG00000130711] Homo sapiens 12,951 uncertain 2.192 1.547
Click to View Chart Preview Click for Info PRDM2 [ENSG00000116731] Homo sapiens 13,439 uncertain 0.755 7.589
Click to View Chart Preview Click for Info PRDM6 [ENSG00000061455] Homo sapiens 13,562 uncertain 2.723 2.371

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ZNF683 (from probeset IMAGE:743699).

Click to enlarge