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Homo sapiens

Cyclebase periodic rank: 272

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.561E-6
P(reg)
= 1.776E-4
Peaktime
= S (62%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info hhf1 [SPAC1834.03c] Schizosaccharomyces pombe 17 G1/S 1.86E-45 1.42E-22
Periodic
Click to View Chart Preview Click for Info hhf2 [SPBC8D2.03c] Schizosaccharomyces pombe 18 G1/S 1.48E-45 1.86E-22
Periodic
Click to View Chart Preview Click for Info HHF2 [YNL030W] Saccharomyces cerevisiae 20 S 2.78E-21 1.9E-12
Periodic
Click to View Chart Preview Click for Info h4.3 [SPBC1105.12] Schizosaccharomyces pombe 25 G1/S 1.02E-44 2.56E-21
Periodic
Click to View Chart Preview Click for Info HHF1 [YBR009C] Saccharomyces cerevisiae 30 S 3.74E-19 6.43E-13
Periodic
Click to View Chart Preview Click for Info At3g45930 Arabidopsis thaliana 62 S 0.001 0.002
Periodic
Click to View Chart Preview Click for Info AT3g53730 Arabidopsis thaliana 173 S/G2 0.004 0.019
Periodic
Click to View Chart Preview Click for Info AT5g59690 Arabidopsis thaliana 211 S/G2 0.006 0.034
Periodic
Click to View Chart Preview Click for Info HIST2H4B [ENSG00000182217] Homo sapiens 219 S 1.59E-7 2.58E-4
Periodic
Click to View Chart Preview Click for Info HIST2H4A [ENSG00000183941] Homo sapiens 220 S 1.59E-7 2.58E-4
Periodic
Click to View Chart Preview Click for Info AT2g28740 Arabidopsis thaliana 309 S/G2 0.009 0.061
Periodic
Click to View Chart Preview Click for Info HIST1H4C [ENSG00000197061] Homo sapiens 320 S 8.15E-5 2.35E-5
Periodic
Click to View Chart Preview Click for Info HIST1H4E [ENSG00000198518] Homo sapiens 500 S 4.83E-5 0.003
Periodic
Click to View Chart Preview Click for Info AT1g07820 Arabidopsis thaliana 592 uncertain 0.006 0.386
Click to View Chart Preview Click for Info HIST1H4J [ENSG00000197238] Homo sapiens 4,631 uncertain 0.011 1.149

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of HIST1H4B (from probeset IMAGE:1842170).

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