Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Homo sapiens

Cyclebase periodic rank: 2,918



Gene Features:

[hide] [show]
Degradation Signals:
  1. PEST

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.1804
P(reg)
= 0.0121
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info PLAG1 [ENSG00000181690] Homo sapiens 153 M 1.33E-12 0.131
Periodic
Click to View Chart Preview Click for Info IVNS1ABP [ENSG00000116679] Homo sapiens 166 G1 8.12E-12 0.086
Periodic
Click to View Chart Preview Click for Info At2g30610 [AT2G30600] Arabidopsis thaliana 317 G1 0.01 0.052
Periodic
Click to View Chart Preview Click for Info KBTBD3 [ENSG00000182359] Homo sapiens 1,413 uncertain 0.023 0.004
Click to View Chart Preview Click for Info KEAP1 [ENSG00000079999] Homo sapiens 2,011 uncertain 0.153 0.003
Click to View Chart Preview Click for Info CHRM1 [ENSG00000168539] Homo sapiens 2,012 uncertain 0.153 0.003
Click to View Chart Preview Click for Info KLHL24 [ENSG00000114796] Homo sapiens 2,261 uncertain 0.464 0.002
Click to View Chart Preview Click for Info KLHL21 [ENSG00000162413] Homo sapiens 3,245 uncertain 0.002 1.633
Click to View Chart Preview Click for Info KLHL18 [ENSG00000114648] Homo sapiens 3,565 uncertain 0.177 0.027
Click to View Chart Preview Click for Info KLHL4 [ENSG00000102271] Homo sapiens 3,988 uncertain 1.337 0.005
Click to View Chart Preview Click for Info KBTBD9 [ENSG00000119771] Homo sapiens 4,082 uncertain 0.057 0.136
Click to View Chart Preview Click for Info KLHL12 [ENSG00000117153] Homo sapiens 4,648 uncertain 0.092 0.138
Click to View Chart Preview Click for Info KLHL22 [ENSG00000185214] Homo sapiens 5,959 uncertain 0.029 1.202
Click to View Chart Preview Click for Info KBTBD10 [ENSG00000154474] Homo sapiens 6,124 uncertain 3.657 0.011
Click to View Chart Preview Click for Info KLHL14 [ENSG00000197705] Homo sapiens 7,104 uncertain 2.117 0.035
Click to View Chart Preview Click for Info MAV [ENSG00000109466] Homo sapiens 7,190 uncertain 0.338 0.229
Click to View Chart Preview Click for Info ENC1 [ENSG00000171617] Homo sapiens 8,398 uncertain 0.803 0.209
Click to View Chart Preview Click for Info KBTBD4 [ENSG00000123444] Homo sapiens 8,807 uncertain 0.962 0.224
Click to View Chart Preview Click for Info KLHL20 [ENSG00000076321] Homo sapiens 8,870 uncertain 0.273 0.82
Click to View Chart Preview Click for Info BTBD5 [ENSG00000179454] Homo sapiens 9,066 uncertain 0.842 0.298
Click to View Chart Preview Click for Info KLHL7 [ENSG00000122550] Homo sapiens 9,601 uncertain 0.448 0.769
Click to View Chart Preview Click for Info CCIN [ENSG00000185972] Homo sapiens 10,057 uncertain 1.3 0.345
Click to View Chart Preview Click for Info KLHL25 [ENSG00000183655] Homo sapiens 10,155 uncertain 0.203 2.342
Click to View Chart Preview Click for Info KLHL35 [ENSG00000149243] Homo sapiens 10,656 uncertain 2.731 0.241
Click to View Chart Preview Click for Info FLJ12543 [ENSG00000135686] Homo sapiens 12,083 uncertain 5.213 0.315
Click to View Chart Preview Click for Info KLHL13 [ENSG00000003096] Homo sapiens 12,570 uncertain 1.408 1.695
Click to View Chart Preview Click for Info KLHL26 [ENSG00000167487] Homo sapiens 12,747 uncertain 1.664 1.658
Click to View Chart Preview Click for Info SLC35F5 [ENSG00000115084] Homo sapiens 12,763 uncertain 2.417 1.161
Click to View Chart Preview Click for Info KBTBD8 [ENSG00000163376] Homo sapiens 12,764 uncertain 2.417 1.161
Click to View Chart Preview Click for Info KLHL17 [ENSG00000187961] Homo sapiens 13,753 uncertain 2.881 2.946
Click to View Chart Preview Click for Info At2g46260 Arabidopsis thaliana 14,832 uncertain 2.765 0.43

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of KLHL5 (from probeset IMAGE:746080).

Click to enlarge