Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Homo sapiens

Cyclebase periodic rank: 13,229



Gene Features:

[hide] [show]
siRNA Knockdown Phenotype:
  1. Increased S Population

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.5411
P(reg)
= 8.3403
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At1g01200 Arabidopsis thaliana 534 uncertain 0.05 0.002
Click to View Chart Preview Click for Info ypt3 [SPAC18G6.03] Schizosaccharomyces pombe 663 uncertain 8E-17 0.273
Click to View Chart Preview Click for Info YPT11 [YNL304W] Saccharomyces cerevisiae 776 uncertain 1.42E-8 0.047
Click to View Chart Preview Click for Info RABA1B [AT1G16920] Arabidopsis thaliana 876 uncertain 0.003 1.167
Click to View Chart Preview Click for Info RABA1C [AT5G45750] Arabidopsis thaliana 899 uncertain 0.008 0.692
Click to View Chart Preview Click for Info AT4g08190 Arabidopsis thaliana 1,239 uncertain 0.307 4.9E-5
Click to View Chart Preview Click for Info YPT31 [YER031C] Saccharomyces cerevisiae 1,355 uncertain 2.94E-4 0.082
Click to View Chart Preview Click for Info At1g73640 Arabidopsis thaliana 2,225 uncertain 0.276 0.021
Click to View Chart Preview Click for Info At3g07410 Arabidopsis thaliana 2,360 uncertain 0.158 0.137
Click to View Chart Preview Click for Info YPT32 [YGL210W] Saccharomyces cerevisiae 2,466 uncertain 0.002 2.001
Click to View Chart Preview Click for Info F16N3.12 [AT5G59150] Arabidopsis thaliana 2,673 uncertain 0.044 0.923
Click to View Chart Preview Click for Info H-YPT3 [ENSG00000185236] Homo sapiens 3,331 uncertain 0.007 0.505
Click to View Chart Preview Click for Info At1g18200 Arabidopsis thaliana 7,299 uncertain 0.139 1.669
Click to View Chart Preview Click for Info At4g03156 Arabidopsis thaliana 8,063 uncertain 1.966 0.04
Click to View Chart Preview Click for Info T21B14.2 [AT3G12160] Arabidopsis thaliana 8,071 uncertain 2.92 0.005
Click to View Chart Preview Click for Info AT5g60860 Arabidopsis thaliana 9,050 uncertain 1.167 0.198
Click to View Chart Preview Click for Info At1g28550 Arabidopsis thaliana 9,352 uncertain 2.991 0.023
Click to View Chart Preview Click for Info AT1g07410 Arabidopsis thaliana 9,851 uncertain 0.876 0.373
Click to View Chart Preview Click for Info ARA-4 [AT2G43130] Arabidopsis thaliana 9,951 uncertain 0.229 1.972
Click to View Chart Preview Click for Info RABA1A [AT1G06400] Arabidopsis thaliana 11,550 uncertain 0.585 1.05
Click to View Chart Preview Click for Info smg1 [AT5G47960] Arabidopsis thaliana 12,216 uncertain 0.793 0.9
Click to View Chart Preview Click for Info At5g65270 Arabidopsis thaliana 12,449 uncertain 0.498 1.693
Click to View Chart Preview Click for Info ARA-1 [AT1G05810] Arabidopsis thaliana 12,931 uncertain 0.799 1.102
Click to View Chart Preview Click for Info RAB25 [ENSG00000132698] Homo sapiens 13,011 uncertain 1.846 1.953
Click to View Chart Preview Click for Info AT4g18430 Arabidopsis thaliana 13,933 uncertain 1.019 1.121
Click to View Chart Preview Click for Info F28A21.210 [AT4G18800] Arabidopsis thaliana 14,903 uncertain 0.69 2.366
Click to View Chart Preview Click for Info At2g33870 Arabidopsis thaliana 15,253 uncertain 1.731 0.864
Click to View Chart Preview Click for Info At2g31680 Arabidopsis thaliana 16,725 uncertain 0.969 2.537
Click to View Chart Preview Click for Info RABA2A [AT1G09630] Arabidopsis thaliana 17,507 uncertain 1.257 2.326
Click to View Chart Preview Click for Info RABA2C [AT3G46830] Arabidopsis thaliana 18,688 uncertain 2.455 1.416
Click to View Chart Preview Click for Info At5g47520 Arabidopsis thaliana 19,196 uncertain 1.715 2.482

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of YL8 (from probeset IMAGE:365060).

Click to enlarge