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Homo sapiens

Cyclebase periodic rank: 9,325



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.3753
P(reg)
= 0.2131
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info psy1 [SPCC825.03c] Schizosaccharomyces pombe 93 M 1.2E-36 2.18E-7
Periodic
Click to View Chart Preview Click for Info KN [AT1G08560] Arabidopsis thaliana 150 G1 0.02 2.71E-5
Periodic
Click to View Chart Preview Click for Info SSO2 [YMR183C] Saccharomyces cerevisiae 574 G2 2.25E-6 6.65E-4
Periodic
Click to View Chart Preview Click for Info SSO1 [YPL232W] Saccharomyces cerevisiae 638 uncertain 2.74E-10 0.047
Click to View Chart Preview Click for Info SYP112 [AT2G18260] Arabidopsis thaliana 950 uncertain 0.046 0.101
Click to View Chart Preview Click for Info SYP124 [AT1G61290] Arabidopsis thaliana 3,126 uncertain 0.402 0.048
Click to View Chart Preview Click for Info SYP131 [AT3G03800] Arabidopsis thaliana 4,953 uncertain 0.402 0.206
Click to View Chart Preview Click for Info SYP132 [AT5G08080] Arabidopsis thaliana 6,256 uncertain 0.08 2.373
Click to View Chart Preview Click for Info STX3 [ENSG00000166900] Homo sapiens 6,539 uncertain 1.633 0.031
Click to View Chart Preview Click for Info SYP123 [AT4G03330] Arabidopsis thaliana 9,638 uncertain 1.04 0.28
Click to View Chart Preview Click for Info SYP121 [AT3G11820] Arabidopsis thaliana 10,048 uncertain 1.684 0.163
Click to View Chart Preview Click for Info SYP122 [AT3G52400] Arabidopsis thaliana 11,511 uncertain 1.158 0.451
Click to View Chart Preview Click for Info STX1 [ENSG00000106089] Homo sapiens 11,998 uncertain 0.329 4.783
Click to View Chart Preview Click for Info SYP125 [AT1G11250] Arabidopsis thaliana 13,801 uncertain 2.963 0.287

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of STX4 (from probeset IMAGE:399456).

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