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Arabidopsis thaliana

Cyclebase periodic rank: 7,532



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.87
P(reg)
= 0.1788
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CDKN2C [ENSG00000123080] Homo sapiens 58 G2 4.95E-15 5.55E-5
Periodic
Click to View Chart Preview Click for Info F18O22_20 [AT5G14230] Arabidopsis thaliana 213 G1 0.017 5.61E-4
Periodic
Click to View Chart Preview Click for Info ANKRD10 [ENSG00000088448] Homo sapiens 383 S 4.25E-7 0.037
Periodic
Click to View Chart Preview Click for Info SPBC2F12.05c Schizosaccharomyces pombe 491 uncertain 3.55E-11 3.15E-5
Periodic
Click to View Chart Preview Click for Info KBF1 [ENSG00000109320] Homo sapiens 550 G2 9.8E-6 0.033
Periodic
Click to View Chart Preview Click for Info IKBR [ENSG00000160949] Homo sapiens 608 uncertain 1.49E-4 0.004
Click to View Chart Preview Click for Info ANKRD18A [ENSG00000180071] Homo sapiens 874 uncertain 9E-6 0.961
Click to View Chart Preview Click for Info ANKRD18A [ENSG00000204783] Homo sapiens 875 uncertain 9E-6 0.961
Click to View Chart Preview Click for Info gde1 [SPAPB1E7.05] Schizosaccharomyces pombe 1,108 uncertain 6.6E-7 0.008
Click to View Chart Preview Click for Info NFKB2 [ENSG00000077150] Homo sapiens 1,377 uncertain 0.296 3.1E-4
Click to View Chart Preview Click for Info YCR051W Saccharomyces cerevisiae 1,391 uncertain 4.6E-4 0.082
Click to View Chart Preview Click for Info YAR1 [YPL239W] Saccharomyces cerevisiae 1,405 uncertain 1.24E-6 0.654
Click to View Chart Preview Click for Info PHO81 [YGR233C] Saccharomyces cerevisiae 1,472 uncertain 2.74E-4 0.144
Click to View Chart Preview Click for Info CDKN2D [ENSG00000129355] Homo sapiens 1,662 uncertain 3.83E-4 0.585
Click to View Chart Preview Click for Info AT3g18670 Arabidopsis thaliana 2,401 uncertain 0.04 0.85
Click to View Chart Preview Click for Info SPCP1E11.10 Schizosaccharomyces pombe 2,719 uncertain 0.342 0.107
Click to View Chart Preview Click for Info ANKRD7 [ENSG00000106013] Homo sapiens 2,741 uncertain 0.019 0.09
Click to View Chart Preview Click for Info IKBA [ENSG00000100906] Homo sapiens 2,931 uncertain 0.004 0.596
Click to View Chart Preview Click for Info F14L17.26 [AT1G14480] Arabidopsis thaliana 2,974 uncertain 0.069 0.692
Click to View Chart Preview Click for Info SPBP16F5.05c Schizosaccharomyces pombe 3,373 uncertain 0.16 3.832
Click to View Chart Preview Click for Info ANKRD29 [ENSG00000154065] Homo sapiens 3,430 uncertain 0.007 0.609
Click to View Chart Preview Click for Info EMB506 [AT5G40160] Arabidopsis thaliana 3,878 uncertain 0.084 0.926
Click to View Chart Preview Click for Info At2g01680 Arabidopsis thaliana 4,163 uncertain 0.075 1.217
Click to View Chart Preview Click for Info NFKBIE [ENSG00000146232] Homo sapiens 4,173 uncertain 0.167 0.051
Click to View Chart Preview Click for Info AVO2 [YMR068W] Saccharomyces cerevisiae 4,234 uncertain 8.497 0.099
Click to View Chart Preview Click for Info HOS4 [YIL112W] Saccharomyces cerevisiae 4,308 uncertain 0.425 2.309
Click to View Chart Preview Click for Info NPR4 [AT4G19660] Arabidopsis thaliana 4,516 uncertain 0.05 2.247
Click to View Chart Preview Click for Info BCL4 [ENSG00000069399] Homo sapiens 4,565 uncertain 0.055 0.215
Click to View Chart Preview Click for Info AT2g47450 Arabidopsis thaliana 4,614 uncertain 0.307 0.256
Click to View Chart Preview Click for Info NFKBID [ENSG00000167604] Homo sapiens 4,880 uncertain 0.011 1.443
Click to View Chart Preview Click for Info RIPK4 [ENSG00000183421] Homo sapiens 5,108 uncertain 0.021 0.885
Click to View Chart Preview Click for Info GDE1 [YPL110C] Saccharomyces cerevisiae 5,291 uncertain 8.981 1.986
Click to View Chart Preview Click for Info At2g17390 Arabidopsis thaliana 5,560 uncertain 0.063 2.555
Click to View Chart Preview Click for Info At5g54720 Arabidopsis thaliana 5,692 uncertain 2.433 4.09E-4
Click to View Chart Preview Click for Info ANKS3 [ENSG00000168096] Homo sapiens 6,075 uncertain 2.874 0.013
Click to View Chart Preview Click for Info ANKRD20A1 [ENSG00000132498] Homo sapiens 6,326 uncertain 1.079 0.041
Click to View Chart Preview Click for Info CCDC29 [ENSG00000172014] Homo sapiens 6,327 uncertain 1.079 0.041
Click to View Chart Preview Click for Info ANKRD20A2 [ENSG00000183148] Homo sapiens 6,328 uncertain 1.079 0.041
Click to View Chart Preview Click for Info ANKRD20A3 [ENSG00000196774] Homo sapiens 6,329 uncertain 1.079 0.041
Click to View Chart Preview Click for Info At1g10340 Arabidopsis thaliana 6,567 uncertain 1.263 0.052
Click to View Chart Preview Click for Info ANKHD1 [ENSG00000131503] Homo sapiens 6,802 uncertain 0.087 0.702
Click to View Chart Preview Click for Info ASB12 [ENSG00000198881] Homo sapiens 6,829 uncertain 0.145 0.43
Click to View Chart Preview Click for Info T1E3_90 [AT5G04730] Arabidopsis thaliana 7,014 uncertain 1.793 0.018
Click to View Chart Preview Click for Info At5g35830 Arabidopsis thaliana 7,173 uncertain 2.471 0.004
Click to View Chart Preview Click for Info ASB3 [ENSG00000115239] Homo sapiens 7,549 uncertain 0.083 1.2
Click to View Chart Preview Click for Info ANKRD20B [ENSG00000204716] Homo sapiens 7,862 uncertain 3.388 0.036
Click to View Chart Preview Click for Info ASB4 [ENSG00000005981] Homo sapiens 7,996 uncertain 1.428 0.091
Click to View Chart Preview Click for Info C21orf99 [ENSG00000163046] Homo sapiens 8,095 uncertain 1.494 0.093
Click to View Chart Preview Click for Info FANK1 [ENSG00000203780] Homo sapiens 8,362 uncertain 0.455 0.362
Click to View Chart Preview Click for Info ASB13 [ENSG00000196372] Homo sapiens 8,430 uncertain 0.123 1.394
Click to View Chart Preview Click for Info ESPN [ENSG00000187017] Homo sapiens 8,800 uncertain 0.575 0.374
Click to View Chart Preview Click for Info At3g12360 Arabidopsis thaliana 8,880 uncertain 0.254 1.276
Click to View Chart Preview Click for Info At2g24600 Arabidopsis thaliana 9,117 uncertain 0.842 0.315
Click to View Chart Preview Click for Info rols [ENSG00000170921] Homo sapiens 9,117 uncertain 1.234 0.211
Click to View Chart Preview Click for Info AT4g03440 Arabidopsis thaliana 9,305 uncertain 2.861 0.027
Click to View Chart Preview Click for Info SYPH1 [ENSG00000064692] Homo sapiens 9,311 uncertain 0.874 0.333
Click to View Chart Preview Click for Info ANKRD52 [ENSG00000139645] Homo sapiens 9,372 uncertain 0.04 7.519
Click to View Chart Preview Click for Info At5g60070 Arabidopsis thaliana 9,405 uncertain 1.409 0.17
Click to View Chart Preview Click for Info AT4g03490 Arabidopsis thaliana 9,563 uncertain 0.635 0.513
Click to View Chart Preview Click for Info F8M12.17 [AT4G11000] Arabidopsis thaliana 10,497 uncertain 1.777 0.182
Click to View Chart Preview Click for Info At2g31820 Arabidopsis thaliana 10,505 uncertain 0.362 1.363
Click to View Chart Preview Click for Info F8A24.6 [AT3G09890] Arabidopsis thaliana 10,786 uncertain 0.35 1.54
Click to View Chart Preview Click for Info ANKRD37 [ENSG00000186352] Homo sapiens 10,925 uncertain 0.644 1.215
Click to View Chart Preview Click for Info ANKS4B [ENSG00000175311] Homo sapiens 11,091 uncertain 3.782 0.233
Click to View Chart Preview Click for Info LOC348840 [ENSG00000186649] Homo sapiens 11,166 uncertain 3.134 0.294
Click to View Chart Preview Click for Info GUCA1B [ENSG00000112599] Homo sapiens 11,468 uncertain 1.462 0.77
Click to View Chart Preview Click for Info ASB6 [ENSG00000148331] Homo sapiens 11,469 uncertain 1.462 0.77
Click to View Chart Preview Click for Info IMAGE:418198 [ENSG00000176315] Homo sapiens 11,470 uncertain 1.462 0.77
Click to View Chart Preview Click for Info IMAGE:418198 [ENSG00000205857] Homo sapiens 11,471 uncertain 1.462 0.77
Click to View Chart Preview Click for Info At5g50140 Arabidopsis thaliana 11,669 uncertain 0.353 2.017
Click to View Chart Preview Click for Info NPR3 [AT5G45110] Arabidopsis thaliana 11,773 uncertain 0.477 1.447
Click to View Chart Preview Click for Info AT5g54610 Arabidopsis thaliana 12,063 uncertain 2.907 0.159
Click to View Chart Preview Click for Info IKBB [ENSG00000104825] Homo sapiens 12,210 uncertain 1.232 1.479
Click to View Chart Preview Click for Info At5g61230 Arabidopsis thaliana 12,285 uncertain 0.483 1.673
Click to View Chart Preview Click for Info ESPNL [ENSG00000144488] Homo sapiens 12,381 uncertain 2.901 0.71
Click to View Chart Preview Click for Info ROLSB [ENSG00000115183] Homo sapiens 12,436 uncertain 1.225 1.747
Click to View Chart Preview Click for Info ASB2 [ENSG00000100628] Homo sapiens 12,553 uncertain 0.9 2.619
Click to View Chart Preview Click for Info ANKRD16 [ENSG00000134461] Homo sapiens 12,708 uncertain 1.93 1.386
Click to View Chart Preview Click for Info ANKHZN [ENSG00000185722] Homo sapiens 12,804 uncertain 0.631 4.649
Click to View Chart Preview Click for Info NPR2 [AT4G26120] Arabidopsis thaliana 12,991 uncertain 1.263 0.641
Click to View Chart Preview Click for Info At3g54070 Arabidopsis thaliana 13,039 uncertain 0.644 1.473
Click to View Chart Preview Click for Info ASB8 [ENSG00000177981] Homo sapiens 13,160 uncertain 1.563 2.669
Click to View Chart Preview Click for Info ANKRD28 [ENSG00000206560] Homo sapiens 13,574 uncertain 6.58 0.996
Click to View Chart Preview Click for Info ASB9 [ENSG00000102048] Homo sapiens 14,136 uncertain 10.949 6.13
Click to View Chart Preview Click for Info At5g02620 Arabidopsis thaliana 14,487 uncertain 1.006 1.328
Click to View Chart Preview Click for Info F4P13.30 [AT3G01750] Arabidopsis thaliana 14,546 uncertain 2.557 0.433
Click to View Chart Preview Click for Info BOP2 [AT2G41370] Arabidopsis thaliana 14,580 uncertain 1.412 0.905
Click to View Chart Preview Click for Info NPR1 [AT1G64280] Arabidopsis thaliana 15,257 uncertain 1.498 1.03
Click to View Chart Preview Click for Info T32N4.3 [AT4G05040] Arabidopsis thaliana 15,669 uncertain 1.158 1.569
Click to View Chart Preview Click for Info KEG [AT5G13530] Arabidopsis thaliana 16,154 uncertain 0.904 2.381
Click to View Chart Preview Click for Info AT4g03500 Arabidopsis thaliana 16,437 uncertain 2.037 0.967
Click to View Chart Preview Click for Info AT5g54700 Arabidopsis thaliana 16,519 uncertain 2.486 0.777
Click to View Chart Preview Click for Info At5g51160 Arabidopsis thaliana 16,550 uncertain 2.92 0.643
Click to View Chart Preview Click for Info F24I3.210 [AT3G57130] Arabidopsis thaliana 17,367 uncertain 2.768 0.861
Click to View Chart Preview Click for Info ACD6 [AT4G14400] Arabidopsis thaliana 17,481 uncertain 1.817 1.484
Click to View Chart Preview Click for Info AKRP [AT5G66055] Arabidopsis thaliana 17,483 uncertain 1.325 2.17
Click to View Chart Preview Click for Info T1E3_40 [AT5G04680] Arabidopsis thaliana 18,008 uncertain 1.805 1.72
Click to View Chart Preview Click for Info ANK5 [AT4G03480] Arabidopsis thaliana 18,576 uncertain 2.492 1.351
Click to View Chart Preview Click for Info At3g04710 Arabidopsis thaliana 18,662 uncertain 2.269 1.55
Click to View Chart Preview Click for Info dl3235w [AT4G14390] Arabidopsis thaliana 18,777 uncertain 2.393 1.495
Click to View Chart Preview Click for Info AT4g03450 Arabidopsis thaliana 19,077 uncertain 1.728 2.382
Click to View Chart Preview Click for Info AKR2 [AT4G35450] Arabidopsis thaliana 19,528 uncertain 1.796 2.579
Click to View Chart Preview Click for Info F11F8_13 [AT3G09550] Arabidopsis thaliana 20,733 uncertain 3.071 2.125

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of AT5g54620 (from probeset AT5G54620).

Click to enlarge