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Arabidopsis thaliana

Cyclebase periodic rank: 6,145



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1053
P(reg)
= 1.6666
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RAD28 [YDR030C] Saccharomyces cerevisiae 1,403 uncertain 2.13E-5 0.252
Click to View Chart Preview Click for Info MDV1 [YJL112W] Saccharomyces cerevisiae 1,821 uncertain 1.7E-5 1.382
Click to View Chart Preview Click for Info mdv1 [SPAC664.15] Schizosaccharomyces pombe 2,821 uncertain 0.635 0.057
Click to View Chart Preview Click for Info rec14 [SPBC32F12.02] Schizosaccharomyces pombe 4,492 uncertain 609.798 4.252
Click to View Chart Preview Click for Info CAF4 [YKR036C] Saccharomyces cerevisiae 4,500 uncertain 0.52 3.421
Click to View Chart Preview Click for Info At2g26490 Arabidopsis thaliana 4,615 uncertain 0.588 0.09
Click to View Chart Preview Click for Info WDR7 [ENSG00000091157] Homo sapiens 5,832 uncertain 0.053 0.589
Click to View Chart Preview Click for Info SKI8 [YGL213C] Saccharomyces cerevisiae 5,860 uncertain 42.24 3.846
Click to View Chart Preview Click for Info TEX1 [YNL253W] Saccharomyces cerevisiae 6,039 uncertain 123.1 5.153
Click to View Chart Preview Click for Info WDR72 [ENSG00000166415] Homo sapiens 6,439 uncertain 1.683 0.028
Click to View Chart Preview Click for Info At1g49450 Arabidopsis thaliana 7,554 uncertain 1.604 0.052
Click to View Chart Preview Click for Info At1g24530 Arabidopsis thaliana 9,271 uncertain 2.415 0.052
Click to View Chart Preview Click for Info WDSUB1 [ENSG00000196151] Homo sapiens 12,465 uncertain 0.965 2.264
Click to View Chart Preview Click for Info WDR32 [ENSG00000122741] Homo sapiens 13,290 uncertain 2.289 2.118
Click to View Chart Preview Click for Info At4g11270 Arabidopsis thaliana 15,972 uncertain 0.889 2.33
Click to View Chart Preview Click for Info At1g47610 Arabidopsis thaliana 17,906 uncertain 1.601 1.941

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At5g50120 (from probeset AT5G50120).

Click to enlarge