Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 
[Viewing data for 'Menges-suc' only. See combined data for MNJ7.1]

Arabidopsis thaliana

Cyclebase periodic rank: 17,720



Gene Features:

[hide] [show]
Degradation Signals:
  1. KENbox

Analysis Results

[hide] [show]

Analysis Results of 'Menges-suc'

P(per)
= 3.9565
P(reg)
= 1.4042
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ADE8 [YDR408C] Saccharomyces cerevisiae 1,063 uncertain 9.28E-6 0.059
Click to View Chart Preview Click for Info dl4715c [AT4G17360] Arabidopsis thaliana 2,768 uncertain 0.276 0.077
Click to View Chart Preview Click for Info ade5 [SPCC569.08c] Schizosaccharomyces pombe 2,909 uncertain 2.346 0.004
Click to View Chart Preview Click for Info GART [ENSG00000159131] Homo sapiens 3,407 uncertain 0.001 2.896
Click to View Chart Preview Click for Info PUR3 [AT1G31220] Arabidopsis thaliana 17,784 uncertain 1.644 1.818

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MNJ7.1 (from probeset AT5G47435).

Click to enlarge