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[Viewing data for 'Menges-aph' only. See combined data for RPS7C]

Arabidopsis thaliana

Cyclebase periodic rank: 11,559



Analysis Results

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Analysis Results of 'Menges-aph'

P(per)
= 0.613
P(reg)
= 1.282
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
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Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPS7A [YOR096W] Saccharomyces cerevisiae 2,314 uncertain 0.01 0.212
Click to View Chart Preview Click for Info RPS7B [YNL096C] Saccharomyces cerevisiae 2,385 uncertain 0.571 0.005
Click to View Chart Preview Click for Info rps7 [SPAC18G6.14c] Schizosaccharomyces pombe 3,146 uncertain 0.868 0.66
Click to View Chart Preview Click for Info RPS7B [AT3G02560] Arabidopsis thaliana 6,176 uncertain 0.099 1.811
Click to View Chart Preview Click for Info RPS7 [ENSG00000171863] Homo sapiens 11,481 uncertain 0.569 1.988
Click to View Chart Preview Click for Info RPS7A [AT1G48830] Arabidopsis thaliana 16,622 uncertain 1.121 2.078

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of RPS7C (from probeset AT5G16130).

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