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Arabidopsis thaliana

Cyclebase periodic rank: 6,446



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1455
P(reg)
= 1.2392
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info GATA11 [AT4G32890] Arabidopsis thaliana 141 S/G2 0.009 7.37E-4
Periodic
Click to View Chart Preview Click for Info At3g06740 Arabidopsis thaliana 436 uncertain 0.026 0.013
Click to View Chart Preview Click for Info GATA2 [ENSG00000179348] Homo sapiens 1,149 uncertain 2.95E-5 1.263
Click to View Chart Preview Click for Info gaf1 [SPCC1902.01] Schizosaccharomyces pombe 1,903 uncertain 2.8E-8 2.01
Click to View Chart Preview Click for Info fep1 [SPAC23E2.01] Schizosaccharomyces pombe 2,082 uncertain 2.22E-6 0.966
Click to View Chart Preview Click for Info ARR17 [AT3G56380] Arabidopsis thaliana 2,108 uncertain 0.789 2.59E-5
Click to View Chart Preview Click for Info SPCC1393.08 Schizosaccharomyces pombe 2,287 uncertain 0.153 0.007
Click to View Chart Preview Click for Info ARR7 [AT1G19050] Arabidopsis thaliana 2,479 uncertain 0.064 0.523
Click to View Chart Preview Click for Info GAT2 [YMR136W] Saccharomyces cerevisiae 2,759 uncertain 2.83 0.004
Click to View Chart Preview Click for Info GAT1 [YFL021W] Saccharomyces cerevisiae 2,771 uncertain 26.76 6.62E-5
Click to View Chart Preview Click for Info SRD1 [YCR018C] Saccharomyces cerevisiae 2,851 uncertain 3.478 0.004
Click to View Chart Preview Click for Info ARR12 [AT2G25180] Arabidopsis thaliana 2,927 uncertain 0.034 1.515
Click to View Chart Preview Click for Info ARR3 [AT1G59940] Arabidopsis thaliana 2,963 uncertain 0.498 0.011
Click to View Chart Preview Click for Info ARR16 [AT2G40670] Arabidopsis thaliana 3,070 uncertain 0.57 0.007
Click to View Chart Preview Click for Info DAL80 [YKR034W] Saccharomyces cerevisiae 3,077 uncertain 23.88 0.001
Click to View Chart Preview Click for Info COL6 [AT1G68520] Arabidopsis thaliana 3,230 uncertain 0.461 0.035
Click to View Chart Preview Click for Info CIA2 [AT5G57180] Arabidopsis thaliana 3,235 uncertain 0.353 0.08
Click to View Chart Preview Click for Info GZF3 [YJL110C] Saccharomyces cerevisiae 3,398 uncertain 0.067 1.19
Click to View Chart Preview Click for Info GATA3 [ENSG00000107485] Homo sapiens 3,459 uncertain 0.002 1.758
Click to View Chart Preview Click for Info APRR5 [AT5G24470] Arabidopsis thaliana 3,486 uncertain 0.659 0.01
Click to View Chart Preview Click for Info GATA6 [ENSG00000141448] Homo sapiens 3,772 uncertain 0.01 0.605
Click to View Chart Preview Click for Info ECM23 [YPL021W] Saccharomyces cerevisiae 3,821 uncertain 16.72 0.016
Click to View Chart Preview Click for Info ARR5 [AT3G48100] Arabidopsis thaliana 3,920 uncertain 0.396 0.12
Click to View Chart Preview Click for Info sfh1 [SPCC16A11.14] Schizosaccharomyces pombe 4,102 uncertain 42.384 4.254
Click to View Chart Preview Click for Info GAT3 [YLR013W] Saccharomyces cerevisiae 4,496 uncertain 0.649 2.718
Click to View Chart Preview Click for Info GAT4 [YIR013C] Saccharomyces cerevisiae 4,506 uncertain 3.81 0.476
Click to View Chart Preview Click for Info ARR9 [AT3G57040] Arabidopsis thaliana 4,902 uncertain 0.223 0.435
Click to View Chart Preview Click for Info ARR21 [AT5G07210] Arabidopsis thaliana 5,031 uncertain 0.616 0.109
Click to View Chart Preview Click for Info F10K1.24 [AT1G07050] Arabidopsis thaliana 5,051 uncertain 1.697 0.001
Click to View Chart Preview Click for Info APRR1 [AT5G61380] Arabidopsis thaliana 5,106 uncertain 0.07 1.929
Click to View Chart Preview Click for Info ARR8 [AT2G41310] Arabidopsis thaliana 5,151 uncertain 0.316 0.31
Click to View Chart Preview Click for Info AT5g62110 Arabidopsis thaliana 5,159 uncertain 2.276 2.57E-4
Click to View Chart Preview Click for Info GLN3 [YER040W] Saccharomyces cerevisiae 5,469 uncertain 21.05 1.435
Click to View Chart Preview Click for Info COL5 [AT5G57660] Arabidopsis thaliana 5,781 uncertain 1.266 0.022
Click to View Chart Preview Click for Info APRR2 [AT4G18020] Arabidopsis thaliana 5,875 uncertain 0.734 0.121
Click to View Chart Preview Click for Info ARR6 [AT5G62920] Arabidopsis thaliana 6,079 uncertain 0.533 0.216
Click to View Chart Preview Click for Info TRPS1 [ENSG00000104447] Homo sapiens 6,257 uncertain 1.725 0.024
Click to View Chart Preview Click for Info COL1 [AT5G15850] Arabidopsis thaliana 6,626 uncertain 1.771 0.012
Click to View Chart Preview Click for Info ARR11 [AT1G67710] Arabidopsis thaliana 6,646 uncertain 1.786 0.012
Click to View Chart Preview Click for Info CO [AT5G15840] Arabidopsis thaliana 6,778 uncertain 2.48 0.002
Click to View Chart Preview Click for Info ARR18 [AT5G58080] Arabidopsis thaliana 6,844 uncertain 1.127 0.085
Click to View Chart Preview Click for Info ARR19 [AT1G49190] Arabidopsis thaliana 8,046 uncertain 2.375 0.016
Click to View Chart Preview Click for Info GATA2 [AT2G45050] Arabidopsis thaliana 8,111 uncertain 0.449 0.518
Click to View Chart Preview Click for Info HANL2 [AT4G36620] Arabidopsis thaliana 8,218 uncertain 1.48 0.097
Click to View Chart Preview Click for Info CIL [AT4G25990] Arabidopsis thaliana 8,429 uncertain 2.053 0.046
Click to View Chart Preview Click for Info APRR4 [AT5G49240] Arabidopsis thaliana 8,682 uncertain 2.669 0.018
Click to View Chart Preview Click for Info At4g26150 Arabidopsis thaliana 9,261 uncertain 2.898 0.025
Click to View Chart Preview Click for Info COL2 [AT3G02380] Arabidopsis thaliana 9,297 uncertain 2.402 0.053
Click to View Chart Preview Click for Info At5g26930 Arabidopsis thaliana 9,755 uncertain 1.245 0.229
Click to View Chart Preview Click for Info GATA5 [AT1G08000] Arabidopsis thaliana 10,123 uncertain 2.703 0.068
Click to View Chart Preview Click for Info APRR7 [AT5G02810] Arabidopsis thaliana 10,401 uncertain 0.879 0.448
Click to View Chart Preview Click for Info GATA3 [AT4G34680] Arabidopsis thaliana 10,449 uncertain 0.471 0.974
Click to View Chart Preview Click for Info At4g17570 Arabidopsis thaliana 10,502 uncertain 1.226 0.303
Click to View Chart Preview Click for Info ARR1 [AT3G16857] Arabidopsis thaliana 10,784 uncertain 0.313 1.761
Click to View Chart Preview Click for Info At5g62120 Arabidopsis thaliana 10,790 uncertain 2.294 0.136
Click to View Chart Preview Click for Info At3g50870 Arabidopsis thaliana 11,033 uncertain 2.65 0.118
Click to View Chart Preview Click for Info At2g18380 Arabidopsis thaliana 11,426 uncertain 0.746 0.754
Click to View Chart Preview Click for Info GATA5 [ENSG00000130700] Homo sapiens 12,584 uncertain 3.658 0.655
Click to View Chart Preview Click for Info At5g25830 Arabidopsis thaliana 13,016 uncertain 1.062 0.799
Click to View Chart Preview Click for Info At1g05290 Arabidopsis thaliana 13,123 uncertain 1.628 0.491
Click to View Chart Preview Click for Info GATA1 [ENSG00000102145] Homo sapiens 13,340 uncertain 1.533 3.325
Click to View Chart Preview Click for Info ARR2 [AT4G16110] Arabidopsis thaliana 13,694 uncertain 1.523 0.636
Click to View Chart Preview Click for Info At5g56860 Arabidopsis thaliana 13,972 uncertain 2.61 0.356
Click to View Chart Preview Click for Info At3g16870 Arabidopsis thaliana 15,608 uncertain 3.003 0.485
Click to View Chart Preview Click for Info ARR4 [AT1G10470] Arabidopsis thaliana 15,691 uncertain 1.167 1.563
Click to View Chart Preview Click for Info GATA4 [AT3G60530] Arabidopsis thaliana 16,004 uncertain 1.449 1.303
Click to View Chart Preview Click for Info GATA10 [AT3G54810] Arabidopsis thaliana 16,222 uncertain 1.529 1.285
Click to View Chart Preview Click for Info ARR15 [AT1G74890] Arabidopsis thaliana 16,558 uncertain 1.291 1.729
Click to View Chart Preview Click for Info ARR14 [AT2G01760] Arabidopsis thaliana 16,566 uncertain 2.498 0.78
Click to View Chart Preview Click for Info COL7 [AT1G73870] Arabidopsis thaliana 16,784 uncertain 2.402 0.863
Click to View Chart Preview Click for Info At5g66320 Arabidopsis thaliana 16,890 uncertain 1.932 1.164
Click to View Chart Preview Click for Info ARR10 [AT4G31920] Arabidopsis thaliana 17,022 uncertain 2.433 0.913
Click to View Chart Preview Click for Info TIFY1 [AT4G24470] Arabidopsis thaliana 17,651 uncertain 1.245 2.441
Click to View Chart Preview Click for Info APRR3 [AT5G60100] Arabidopsis thaliana 17,885 uncertain 2.121 1.375
Click to View Chart Preview Click for Info COL3 [AT2G24790] Arabidopsis thaliana 18,401 uncertain 1.625 2.17
Click to View Chart Preview Click for Info TIFY2B [AT3G21175] Arabidopsis thaliana 18,628 uncertain 1.991 1.799
Click to View Chart Preview Click for Info COL4 [AT5G24930] Arabidopsis thaliana 19,267 uncertain 2.684 1.477
Click to View Chart Preview Click for Info GATA1 [AT3G24050] Arabidopsis thaliana 19,658 uncertain 1.882 2.542
Click to View Chart Preview Click for Info TIFY2A [AT1G51600] Arabidopsis thaliana 20,901 uncertain 2.916 2.534

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At5g14370 (from probeset AT5G14370).

Click to enlarge