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Arabidopsis thaliana

Cyclebase periodic rank: 661



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.003
P(reg)
= 0.6955
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HHT1 [YBR010W] Saccharomyces cerevisiae 13 S 1.66E-22 1.22E-12
Periodic
Click to View Chart Preview Click for Info h3.3 [SPBC1105.11c] Schizosaccharomyces pombe 20 S 7.54E-46 3.47E-21
Periodic
Click to View Chart Preview Click for Info hht3 [SPAC1834.04] Schizosaccharomyces pombe 26 S 5.8E-45 5.15E-21
Periodic
Click to View Chart Preview Click for Info HHT2 [YNL031C] Saccharomyces cerevisiae 28 S 1.03E-21 1.72E-10
Periodic
Click to View Chart Preview Click for Info SPBC8D2.04 Schizosaccharomyces pombe 29 S 6.16E-46 1.88E-18
Periodic
Click to View Chart Preview Click for Info AT5g10390 Arabidopsis thaliana 44 S 5.36E-4 0.001
Periodic
Click to View Chart Preview Click for Info AT3g27360 Arabidopsis thaliana 78 S 0.003 0.002
Periodic
Click to View Chart Preview Click for Info cnp1 [SPBC1105.17] Schizosaccharomyces pombe 163 G1 7.41E-25 2.67E-5
Periodic
Click to View Chart Preview Click for Info HTR2 [AT1G09200] Arabidopsis thaliana 171 G2 0.006 0.007
Periodic
Click to View Chart Preview Click for Info AT5g65360 Arabidopsis thaliana 262 G2 0.012 0.015
Periodic
Click to View Chart Preview Click for Info At1g13370 Arabidopsis thaliana 492 uncertain 0.06 2.74E-4
Click to View Chart Preview Click for Info CSE4 [YKL049C] Saccharomyces cerevisiae 645 uncertain 6.19E-11 0.084
Click to View Chart Preview Click for Info At1g75600 Arabidopsis thaliana 733 uncertain 0.06 0.009
Click to View Chart Preview Click for Info HTR12 [AT1G01370] Arabidopsis thaliana 1,848 uncertain 0.08 0.211
Click to View Chart Preview Click for Info At5g65350 Arabidopsis thaliana 4,586 uncertain 0.127 0.765
Click to View Chart Preview Click for Info AT4g40040 Arabidopsis thaliana 4,674 uncertain 0.057 2.062
Click to View Chart Preview Click for Info At5g12910 Arabidopsis thaliana 6,490 uncertain 2.78 6.65E-4
Click to View Chart Preview Click for Info MGH3 [AT1G19890] Arabidopsis thaliana 7,495 uncertain 1.771 0.034
Click to View Chart Preview Click for Info AT5g10980 Arabidopsis thaliana 7,701 uncertain 0.136 1.938
Click to View Chart Preview Click for Info HIST1H3D [ENSG00000197409] Homo sapiens 8,609 uncertain 0.907 0.21
Click to View Chart Preview Click for Info H3F3A [ENSG00000163041] Homo sapiens 8,987 uncertain 0.917 0.262
Click to View Chart Preview Click for Info HTR4 [AT4G40030] Arabidopsis thaliana 11,291 uncertain 0.269 2.47
Click to View Chart Preview Click for Info H3F3A [ENSG00000196285] Homo sapiens 12,203 uncertain 1.056 1.709

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of AT5g10400 (from probeset AT5G10400).

Click to enlarge