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[Viewing data for 'Menges-suc' only. See combined data for LCAD-A]

Arabidopsis thaliana

Cyclebase periodic rank: 12,114



Analysis Results

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Analysis Results of 'Menges-suc'

P(per)
= 1.5771
P(reg)
= 0.704
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
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Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ADH3 [YMR083W] Saccharomyces cerevisiae 1,586 uncertain 5.17E-4 0.175
Click to View Chart Preview Click for Info ADH6 [YMR318C] Saccharomyces cerevisiae 1,835 uncertain 0.039 0.01
Click to View Chart Preview Click for Info adh1 [SPCC13B11.01] Schizosaccharomyces pombe 1,927 uncertain 1.39E-4 0.13
Click to View Chart Preview Click for Info ADH1 [YOL086C] Saccharomyces cerevisiae 2,669 uncertain 2.773 0.003
Click to View Chart Preview Click for Info CAD8 [AT4G37990] Arabidopsis thaliana 3,864 uncertain 0.7 0.019
Click to View Chart Preview Click for Info ADH7 [YCR105W] Saccharomyces cerevisiae 3,928 uncertain 0.111 3.282
Click to View Chart Preview Click for Info CAD5 [AT4G34230] Arabidopsis thaliana 4,004 uncertain 0.061 1.447
Click to View Chart Preview Click for Info ADH5 [YBR145W] Saccharomyces cerevisiae 4,345 uncertain 27.7 0.04
Click to View Chart Preview Click for Info ADH2 [YMR303C] Saccharomyces cerevisiae 4,359 uncertain 56.23 0.021
Click to View Chart Preview Click for Info CAD1 [AT4G39330] Arabidopsis thaliana 4,969 uncertain 0.052 2.573
Click to View Chart Preview Click for Info CAD7 [AT4G37980] Arabidopsis thaliana 5,045 uncertain 0.957 0.032
Click to View Chart Preview Click for Info AtCAD1 [AT1G72680] Arabidopsis thaliana 6,650 uncertain 0.133 1.472
Click to View Chart Preview Click for Info cad [AT3G19450] Arabidopsis thaliana 7,653 uncertain 1.282 0.097

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of LCAD-A (from probeset AT4G37970).

Click to enlarge