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Arabidopsis thaliana

Cyclebase periodic rank: 3,655



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1734
P(reg)
= 0.3345
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPL19A [YBR084C-A] Saccharomyces cerevisiae 2,214 uncertain 0.014 0.103
Click to View Chart Preview Click for Info RPL19B [AT3G16780] Arabidopsis thaliana 2,484 uncertain 0.118 0.241
Click to View Chart Preview Click for Info RPL19B [YBL027W] Saccharomyces cerevisiae 2,820 uncertain 3.403 0.004
Click to View Chart Preview Click for Info rpl19a [SPBC56F2.02] Schizosaccharomyces pombe 4,275 uncertain 205.781 1.216
Click to View Chart Preview Click for Info rpl19b [SPCC1682.14] Schizosaccharomyces pombe 4,668 uncertain 8340.127 0.185
Click to View Chart Preview Click for Info RPL19 [ENSG00000108298] Homo sapiens 5,385 uncertain 1.154 0.019
Click to View Chart Preview Click for Info RPL19A [AT1G02780] Arabidopsis thaliana 11,988 uncertain 0.625 1.116
Click to View Chart Preview Click for Info RPL19C [AT4G02230] Arabidopsis thaliana 14,901 uncertain 0.749 2.143

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of dl4055w (from probeset AT4G16030).

Click to enlarge