Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Arabidopsis thaliana

Cyclebase periodic rank: 1,037



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.0086
P(reg)
= 0.8192
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info TUBA3D [ENSG00000075886] Homo sapiens 199 G2 1.2E-8 5.48E-4
Periodic
Click to View Chart Preview Click for Info TUB1 [YML085C] Saccharomyces cerevisiae 208 S/G2 5.74E-15 4.74E-5
Periodic
Click to View Chart Preview Click for Info TUB3 [YML124C] Saccharomyces cerevisiae 695 uncertain 3.35E-9 0.038
Click to View Chart Preview Click for Info TUBA2 [AT1G04820] Arabidopsis thaliana 737 uncertain 0.02 0.203
Click to View Chart Preview Click for Info tub1 [SPBC800.05c] Schizosaccharomyces pombe 1,883 uncertain 3.78E-4 0.077
Click to View Chart Preview Click for Info nda2 [SPBC16A3.15c] Schizosaccharomyces pombe 2,271 uncertain 2.45E-5 0.914
Click to View Chart Preview Click for Info ATAD1 [ENSG00000138138] Homo sapiens 3,862 uncertain 0.019 0.336
Click to View Chart Preview Click for Info PEX26 [ENSG00000183785] Homo sapiens 5,232 uncertain 0.079 0.253
Click to View Chart Preview Click for Info TUBA1B [ENSG00000123416] Homo sapiens 7,777 uncertain 1.277 0.089
Click to View Chart Preview Click for Info SLC22A4 [ENSG00000197208] Homo sapiens 7,778 uncertain 1.277 0.089
Click to View Chart Preview Click for Info TUBA1 [AT1G64740] Arabidopsis thaliana 14,696 uncertain 0.613 2.573

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of TUBA6 (from probeset AT4G14960).

Click to enlarge