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Arabidopsis thaliana

Cyclebase periodic rank: 1,825



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.257
P(reg)
= 0.0054
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At2g38740 Arabidopsis thaliana 1,121 uncertain 0.013 0.657
Click to View Chart Preview Click for Info SPAC4C5.01 Schizosaccharomyces pombe 1,531 uncertain 1.76E-8 0.349
Click to View Chart Preview Click for Info SPCC1020.07 Schizosaccharomyces pombe 1,832 uncertain 8.74E-9 2.107
Click to View Chart Preview Click for Info HOR2 [YER062C] Saccharomyces cerevisiae 2,027 uncertain 1.799 7.67E-5
Click to View Chart Preview Click for Info At3g48415 [AT3G48420] Arabidopsis thaliana 2,785 uncertain 0.483 0.007
Click to View Chart Preview Click for Info DOG2 [YHR043C] Saccharomyces cerevisiae 2,970 uncertain 0.021 1.082
Click to View Chart Preview Click for Info DOG1 [YHR044C] Saccharomyces cerevisiae 3,766 uncertain 0.098 2.304
Click to View Chart Preview Click for Info RHR2 [YIL053W] Saccharomyces cerevisiae 3,998 uncertain 136.7 0.003
Click to View Chart Preview Click for Info At5g57440 Arabidopsis thaliana 4,183 uncertain 0.08 1.122
Click to View Chart Preview Click for Info AT4g25840 Arabidopsis thaliana 5,979 uncertain 0.139 1.125
Click to View Chart Preview Click for Info F13N6.21 [AT1G56500] Arabidopsis thaliana 6,308 uncertain 0.087 2.211
Click to View Chart Preview Click for Info F9F8.21 [AT3G10970] Arabidopsis thaliana 9,551 uncertain 0.214 1.913
Click to View Chart Preview Click for Info F18E5.90 [AT4G21470] Arabidopsis thaliana 11,091 uncertain 0.257 2.452

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of AT4g11570 (from probeset AT4G11570).

Click to enlarge