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Arabidopsis thaliana

Cyclebase periodic rank: 20,944



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.0774
P(reg)
= 2.5688
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC17C9.12 Schizosaccharomyces pombe 691 uncertain 7.14E-16 0.174
Click to View Chart Preview Click for Info SCS2 [YER120W] Saccharomyces cerevisiae 991 uncertain 5E-6 0.043
Click to View Chart Preview Click for Info SPBC16G5.05c Schizosaccharomyces pombe 1,138 uncertain 2.35E-10 0.137
Click to View Chart Preview Click for Info MOSPD1 [ENSG00000101928] Homo sapiens 3,265 uncertain 4.661 7.4E-4
Click to View Chart Preview Click for Info VAPA [ENSG00000101558] Homo sapiens 3,476 uncertain 0.003 1.332
Click to View Chart Preview Click for Info F18E5.70 [AT4G21450] Arabidopsis thaliana 6,618 uncertain 0.118 1.69
Click to View Chart Preview Click for Info At5g54110 Arabidopsis thaliana 8,026 uncertain 0.118 2.55
Click to View Chart Preview Click for Info At2g23830 Arabidopsis thaliana 9,006 uncertain 1.35 0.156
Click to View Chart Preview Click for Info MOSPD3 [ENSG00000106330] Homo sapiens 9,250 uncertain 0.095 2.954
Click to View Chart Preview Click for Info At1g51280 [AT1G51270] Arabidopsis thaliana 14,627 uncertain 2.91 0.377
Click to View Chart Preview Click for Info At2g45140 Arabidopsis thaliana 16,720 uncertain 1.183 1.995
Click to View Chart Preview Click for Info At5g47180 Arabidopsis thaliana 18,356 uncertain 1.721 2
Click to View Chart Preview Click for Info At4g05060 Arabidopsis thaliana 18,976 uncertain 1.916 2.048
Click to View Chart Preview Click for Info At4g00170 Arabidopsis thaliana 20,847 uncertain 2.786 2.559

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of T4C21_10 (from probeset AT3G60600).

Click to enlarge