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Arabidopsis thaliana

Cyclebase periodic rank: 6,057



Gene Features:

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Degradation Signals:
  1. Dbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.2755
P(reg)
= 0.0301
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CRP1 [YHR146W] Saccharomyces cerevisiae 260 S/G2 1.06E-13 1.22E-4
Periodic
Click to View Chart Preview Click for Info MSG5 [YNL053W] Saccharomyces cerevisiae 626 uncertain 6.68E-5 2.71E-4
Click to View Chart Preview Click for Info MKP7 [ENSG00000111266] Homo sapiens 683 uncertain 0.012 1.52E-4
Click to View Chart Preview Click for Info HVH2 [ENSG00000120875] Homo sapiens 911 uncertain 0.004 0.003
Click to View Chart Preview Click for Info YVH1 [YIR026C] Saccharomyces cerevisiae 1,222 uncertain 9.35E-5 0.066
Click to View Chart Preview Click for Info PPS1 [YBR276C] Saccharomyces cerevisiae 1,431 uncertain 1.42E-7 1.604
Click to View Chart Preview Click for Info DUSP5 [ENSG00000138166] Homo sapiens 1,629 uncertain 1.115 1.83E-4
Click to View Chart Preview Click for Info MDG1 [YNL173C] Saccharomyces cerevisiae 2,105 uncertain 2.796 4.48E-5
Click to View Chart Preview Click for Info GAL83 [YER027C] Saccharomyces cerevisiae 2,117 uncertain 3.14E-4 1.475
Click to View Chart Preview Click for Info D89138 [SPCC1919.03c] Schizosaccharomyces pombe 2,505 uncertain 0.002 0.541
Click to View Chart Preview Click for Info AT5g39790 Arabidopsis thaliana 3,357 uncertain 0.033 2.056
Click to View Chart Preview Click for Info pmp1 [SPBC1685.01] Schizosaccharomyces pombe 3,443 uncertain 1.334 2.356
Click to View Chart Preview Click for Info SDP1 [YIL113W] Saccharomyces cerevisiae 3,596 uncertain 0.1 1.424
Click to View Chart Preview Click for Info SIP2 [YGL208W] Saccharomyces cerevisiae 3,606 uncertain 0.563 0.258
Click to View Chart Preview Click for Info SIP1 [YDR422C] Saccharomyces cerevisiae 4,434 uncertain 0.279 5.279
Click to View Chart Preview Click for Info yvh1 [SPBC17A3.06] Schizosaccharomyces pombe 4,517 uncertain 8422.996 0.003
Click to View Chart Preview Click for Info DUSP27 [ENSG00000198842] Homo sapiens 4,932 uncertain 0.122 0.131
Click to View Chart Preview Click for Info PRKAB1 [ENSG00000111725] Homo sapiens 5,190 uncertain 0.093 0.21
Click to View Chart Preview Click for Info ZDHHC14 [ENSG00000175048] Homo sapiens 5,191 uncertain 0.093 0.21
Click to View Chart Preview Click for Info SKRP1 [ENSG00000162999] Homo sapiens 6,089 uncertain 1.157 0.033
Click to View Chart Preview Click for Info PRKAB2 [ENSG00000131791] Homo sapiens 7,038 uncertain 0.179 0.394
Click to View Chart Preview Click for Info dsPTP1 [AT3G23610] Arabidopsis thaliana 7,656 uncertain 2.947 0.003
Click to View Chart Preview Click for Info HB5 [ENSG00000184545] Homo sapiens 7,694 uncertain 0.049 2.217
Click to View Chart Preview Click for Info At3g10940 Arabidopsis thaliana 8,615 uncertain 0.195 1.633
Click to View Chart Preview Click for Info SSH1 [ENSG00000084112] Homo sapiens 8,912 uncertain 1.122 0.204
Click to View Chart Preview Click for Info DUSP10 [ENSG00000143507] Homo sapiens 8,928 uncertain 0.968 0.239
Click to View Chart Preview Click for Info EPM2A [ENSG00000112425] Homo sapiens 9,959 uncertain 0.686 0.615
Click to View Chart Preview Click for Info STYXL1 [ENSG00000127952] Homo sapiens 10,248 uncertain 0.223 2.25
Click to View Chart Preview Click for Info At1g27070 Arabidopsis thaliana 11,255 uncertain 0.269 2.441
Click to View Chart Preview Click for Info DUSP12 [ENSG00000081721] Homo sapiens 11,686 uncertain 4.519 0.286
Click to View Chart Preview Click for Info At5g21170 Arabidopsis thaliana 11,879 uncertain 3.028 0.137
Click to View Chart Preview Click for Info DUSP13 [ENSG00000079393] Homo sapiens 13,224 uncertain 1.82 2.47
Click to View Chart Preview Click for Info DUSP22 [ENSG00000112679] Homo sapiens 13,316 uncertain 2.03 2.447
Click to View Chart Preview Click for Info IBR5 [AT2G04550] Arabidopsis thaliana 13,373 uncertain 0.492 2.255
Click to View Chart Preview Click for Info AT3g06110 Arabidopsis thaliana 13,991 uncertain 0.545 2.419
Click to View Chart Preview Click for Info At2g28060 Arabidopsis thaliana 14,599 uncertain 0.61 2.506
Click to View Chart Preview Click for Info MKP1 [AT3G55270] Arabidopsis thaliana 15,477 uncertain 0.783 2.389
Click to View Chart Preview Click for Info At1g09020 Arabidopsis thaliana 16,968 uncertain 1.127 2.274
Click to View Chart Preview Click for Info At4g18593 Arabidopsis thaliana 18,858 uncertain 1.588 2.498
Click to View Chart Preview Click for Info PHS1 [AT5G23720] Arabidopsis thaliana 18,926 uncertain 1.985 1.942
Click to View Chart Preview Click for Info AT3g01510 Arabidopsis thaliana 19,270 uncertain 1.774 2.432
Click to View Chart Preview Click for Info KINB2 [AT4G16360] Arabidopsis thaliana 20,099 uncertain 2.359 2.224

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of F4F15.290 (from probeset AT3G52180).

Click to enlarge