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Arabidopsis thaliana

Cyclebase periodic rank: 5,060



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1022
P(reg)
= 1.2088
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At3g49160 Arabidopsis thaliana 521 uncertain 0.17 9.14E-7
Click to View Chart Preview Click for Info PYK2 [YOR347C] Saccharomyces cerevisiae 540 M/G1 2.23E-7 0.001
Periodic
Click to View Chart Preview Click for Info F5D14.22 [AT1G32440] Arabidopsis thaliana 2,733 uncertain 0.08 0.474
Click to View Chart Preview Click for Info pyk1 [SPAC4H3.10c] Schizosaccharomyces pombe 4,030 uncertain 70.353 0.285
Click to View Chart Preview Click for Info At4g26390 Arabidopsis thaliana 4,241 uncertain 0.142 0.581
Click to View Chart Preview Click for Info CDC19 [YAL038W] Saccharomyces cerevisiae 4,991 uncertain 311.7 0.023
Click to View Chart Preview Click for Info At2g36580 Arabidopsis thaliana 6,190 uncertain 0.251 0.592
Click to View Chart Preview Click for Info AT5g56350 Arabidopsis thaliana 7,717 uncertain 0.204 1.2
Click to View Chart Preview Click for Info At5g63680 Arabidopsis thaliana 9,896 uncertain 0.183 2.545
Click to View Chart Preview Click for Info PKLR [ENSG00000143627] Homo sapiens 11,053 uncertain 2.915 0.293
Click to View Chart Preview Click for Info HCN3 [ENSG00000143630] Homo sapiens 11,054 uncertain 2.915 0.293
Click to View Chart Preview Click for Info At3g04050 Arabidopsis thaliana 12,433 uncertain 2.458 0.232
Click to View Chart Preview Click for Info At5g08570 Arabidopsis thaliana 12,606 uncertain 0.421 2.174
Click to View Chart Preview Click for Info At5g52920 Arabidopsis thaliana 15,790 uncertain 1.585 1.111
Click to View Chart Preview Click for Info At3g22960 Arabidopsis thaliana 18,428 uncertain 1.502 2.398

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of At3g25960 (from probeset AT3G25960).

Click to enlarge