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Arabidopsis thaliana

Cyclebase periodic rank: 18,696



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.031
P(reg)
= 1.1007
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info cdc4 [SPAP8A3.08] Schizosaccharomyces pombe 60 M/G1 1.49E-45 2.47E-6
Periodic
Click to View Chart Preview Click for Info CML36 [AT3G10190] Arabidopsis thaliana 590 uncertain 0.002 0.665
Click to View Chart Preview Click for Info cam1 [SPAC3A12.14] Schizosaccharomyces pombe 875 uncertain 2.59E-13 0.162
Click to View Chart Preview Click for Info CML5 [AT2G43290] Arabidopsis thaliana 1,048 uncertain 0.034 0.199
Click to View Chart Preview Click for Info cam2 [SPAC29A4.05] Schizosaccharomyces pombe 1,058 uncertain 2.42E-13 0.736
Click to View Chart Preview Click for Info MLC1 [YGL106W] Saccharomyces cerevisiae 1,277 uncertain 1.72E-5 0.156
Click to View Chart Preview Click for Info CML37 [AT5G42380] Arabidopsis thaliana 1,549 uncertain 0.474 2.6E-5
Click to View Chart Preview Click for Info CML8 [AT4G14640] Arabidopsis thaliana 1,818 uncertain 0.232 0.009
Click to View Chart Preview Click for Info AT5g37780 Arabidopsis thaliana 1,878 uncertain 0.009 2.424
Click to View Chart Preview Click for Info AT3g56800 Arabidopsis thaliana 1,980 uncertain 0.022 1.135
Click to View Chart Preview Click for Info CML18 [AT3G03000] Arabidopsis thaliana 2,157 uncertain 1.142 3.55E-6
Click to View Chart Preview Click for Info CALM1 [ENSG00000160014] Homo sapiens 2,514 uncertain 5.72E-4 2.195
Click to View Chart Preview Click for Info CML29 [AT5G17480] Arabidopsis thaliana 2,710 uncertain 1.05 4.99E-5
Click to View Chart Preview Click for Info CML25 [AT1G24620] Arabidopsis thaliana 3,364 uncertain 0.557 0.019
Click to View Chart Preview Click for Info CAM1 [AT1G66410] Arabidopsis thaliana 3,811 uncertain 0.035 2.504
Click to View Chart Preview Click for Info MLC2 [YPR188C] Saccharomyces cerevisiae 4,163 uncertain 2.439 0.282
Click to View Chart Preview Click for Info CML40 [AT3G01830] Arabidopsis thaliana 4,488 uncertain 2.573 3.23E-5
Click to View Chart Preview Click for Info CML26 [AT1G73630] Arabidopsis thaliana 4,588 uncertain 0.051 2.268
Click to View Chart Preview Click for Info CABP5 [ENSG00000105507] Homo sapiens 4,655 uncertain 0.071 0.179
Click to View Chart Preview Click for Info CML47 [AT3G47480] Arabidopsis thaliana 4,713 uncertain 1.529 0.001
Click to View Chart Preview Click for Info CML4 [AT3G59440] Arabidopsis thaliana 5,300 uncertain 1.257 0.011
Click to View Chart Preview Click for Info SCGN [ENSG00000079689] Homo sapiens 5,314 uncertain 0.11 0.194
Click to View Chart Preview Click for Info CMD1 [YBR109C] Saccharomyces cerevisiae 5,546 uncertain 42.36 0.907
Click to View Chart Preview Click for Info CML41 [AT3G50770] Arabidopsis thaliana 5,564 uncertain 1.238 0.018
Click to View Chart Preview Click for Info CML7 [AT1G05990] Arabidopsis thaliana 5,614 uncertain 2.046 0.001
Click to View Chart Preview Click for Info CML32 [AT5G17470] Arabidopsis thaliana 5,797 uncertain 1.588 0.006
Click to View Chart Preview Click for Info CML23 [AT1G66400] Arabidopsis thaliana 5,908 uncertain 1.146 0.04
Click to View Chart Preview Click for Info CML28 [AT3G03430] Arabidopsis thaliana 6,274 uncertain 2.755 5.01E-4
Click to View Chart Preview Click for Info CML9 [AT3G51920] Arabidopsis thaliana 6,470 uncertain 1.796 0.009
Click to View Chart Preview Click for Info EFCAB7 [ENSG00000203965] Homo sapiens 6,516 uncertain 0.027 1.849
Click to View Chart Preview Click for Info CML38 [AT1G76650] Arabidopsis thaliana 6,992 uncertain 2.526 0.002
Click to View Chart Preview Click for Info CML3 [AT3G07490] Arabidopsis thaliana 7,012 uncertain 1.557 0.035
Click to View Chart Preview Click for Info CML39 [AT1G76640] Arabidopsis thaliana 7,066 uncertain 1.08 0.103
Click to View Chart Preview Click for Info CABP7 [ENSG00000100314] Homo sapiens 7,455 uncertain 1.36 0.068
Click to View Chart Preview Click for Info ZMAT5 [ENSG00000100319] Homo sapiens 7,456 uncertain 1.36 0.068
Click to View Chart Preview Click for Info CML15 [AT1G18530] Arabidopsis thaliana 7,658 uncertain 2.771 0.004
Click to View Chart Preview Click for Info EFCAB2 [ENSG00000203666] Homo sapiens 7,832 uncertain 0.865 0.137
Click to View Chart Preview Click for Info ACP1 [AT5G49480] Arabidopsis thaliana 8,106 uncertain 0.48 0.476
Click to View Chart Preview Click for Info CAM2 [AT2G27030] Arabidopsis thaliana 8,228 uncertain 0.136 2.267
Click to View Chart Preview Click for Info CML2 [AT4G12860] Arabidopsis thaliana 8,265 uncertain 1.861 0.057
Click to View Chart Preview Click for Info CML44 [AT1G21550] Arabidopsis thaliana 8,761 uncertain 2.334 0.038
Click to View Chart Preview Click for Info CML10 [AT2G41090] Arabidopsis thaliana 9,276 uncertain 1.941 0.092
Click to View Chart Preview Click for Info CML24 [AT5G37770] Arabidopsis thaliana 9,309 uncertain 0.647 0.464
Click to View Chart Preview Click for Info CML31 [AT2G36180] Arabidopsis thaliana 9,486 uncertain 1.82 0.115
Click to View Chart Preview Click for Info AT3g43810 Arabidopsis thaliana 9,550 uncertain 0.402 0.891
Click to View Chart Preview Click for Info CABP1 [ENSG00000157782] Homo sapiens 9,840 uncertain 0.241 1.629
Click to View Chart Preview Click for Info CML14 [AT1G62820] Arabidopsis thaliana 10,045 uncertain 0.189 2.553
Click to View Chart Preview Click for Info D22S749 [ENSG00000100362] Homo sapiens 10,362 uncertain 0.173 3.13
Click to View Chart Preview Click for Info CML6 [AT4G03290] Arabidopsis thaliana 10,580 uncertain 2.195 0.135
Click to View Chart Preview Click for Info C9orf58 [ENSG00000126878] Homo sapiens 11,909 uncertain 0.544 2.728
Click to View Chart Preview Click for Info CALB1 [ENSG00000104327] Homo sapiens 11,953 uncertain 1.661 0.921
Click to View Chart Preview Click for Info CABP4 [ENSG00000175544] Homo sapiens 12,049 uncertain 0.778 2.075
Click to View Chart Preview Click for Info EFCAB6 [ENSG00000186976] Homo sapiens 12,102 uncertain 1.291 1.289
Click to View Chart Preview Click for Info CML17 [AT1G32250] Arabidopsis thaliana 12,294 uncertain 2.533 0.212
Click to View Chart Preview Click for Info CALML3 [ENSG00000178363] Homo sapiens 12,351 uncertain 1.981 1.021
Click to View Chart Preview Click for Info CML35 [AT2G41410] Arabidopsis thaliana 12,404 uncertain 0.402 2.164
Click to View Chart Preview Click for Info AIF1 [ENSG00000204472] Homo sapiens 12,433 uncertain 1.212 1.765
Click to View Chart Preview Click for Info AIF1 [ENSG00000206319] Homo sapiens 12,434 uncertain 1.212 1.765
Click to View Chart Preview Click for Info AIF1 [ENSG00000206428] Homo sapiens 12,435 uncertain 1.212 1.765
Click to View Chart Preview Click for Info CML12 [AT2G41100] Arabidopsis thaliana 12,832 uncertain 2.842 0.217
Click to View Chart Preview Click for Info CALML4 [ENSG00000129007] Homo sapiens 13,453 uncertain 4.367 1.332
Click to View Chart Preview Click for Info C14orf143 [ENSG00000140025] Homo sapiens 13,834 uncertain 6.149 1.627
Click to View Chart Preview Click for Info CML33 [AT3G03400] Arabidopsis thaliana 13,898 uncertain 0.854 1.375
Click to View Chart Preview Click for Info CML34 [AT3G03410] Arabidopsis thaliana 13,965 uncertain 2.022 0.489
Click to View Chart Preview Click for Info CML16 [AT3G25600] Arabidopsis thaliana 14,214 uncertain 1.257 0.941
Click to View Chart Preview Click for Info CML21 [AT4G26470] Arabidopsis thaliana 14,396 uncertain 1.635 0.72
Click to View Chart Preview Click for Info CML43 [AT5G44460] Arabidopsis thaliana 15,332 uncertain 1.536 1.021
Click to View Chart Preview Click for Info CML22 [AT3G24110] Arabidopsis thaliana 15,423 uncertain 3.05 0.452
Click to View Chart Preview Click for Info CML42 [AT4G20780] Arabidopsis thaliana 16,697 uncertain 2.972 0.652
Click to View Chart Preview Click for Info AT2g41110 Arabidopsis thaliana 18,050 uncertain 2.907 0.978
Click to View Chart Preview Click for Info CML13 [AT1G12310] Arabidopsis thaliana 18,510 uncertain 1.471 2.507
Click to View Chart Preview Click for Info CML27 [AT1G18210] Arabidopsis thaliana 20,767 uncertain 2.786 2.439

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of CML11 (from probeset AT3G22930).

Click to enlarge