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[Viewing data for 'Menges-suc' only. See combined data for At3g21480]

Arabidopsis thaliana

Cyclebase periodic rank: 13,648



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Analysis Results of 'Menges-suc'

P(per)
= 0.1462
P(reg)
= 1.1447
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At1g67180 Arabidopsis thaliana 200 S 0.003 0.057
Periodic
Click to View Chart Preview Click for Info RTT107 [YHR154W] Saccharomyces cerevisiae 234 G1/S 1.83E-14 1.32E-4
Periodic
Click to View Chart Preview Click for Info SPACUNK4.14 Schizosaccharomyces pombe 342 G2 4.05E-15 1.85E-4
Periodic
Click to View Chart Preview Click for Info MDC1 [ENSG00000137337] Homo sapiens 455 G2 4.06E-7 0.188
Periodic
Click to View Chart Preview Click for Info MDC1 [ENSG00000206385] Homo sapiens 456 G2 4.06E-7 0.188
Periodic
Click to View Chart Preview Click for Info MDC1 [ENSG00000206481] Homo sapiens 457 G2 4.06E-7 0.188
Periodic
Click to View Chart Preview Click for Info brc1 [SPBC582.05c] Schizosaccharomyces pombe 4,464 uncertain 1142.306 0.361
Click to View Chart Preview Click for Info At2g41450 Arabidopsis thaliana 12,560 uncertain 1.084 0.684

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At3g21480 (from probeset AT3G21480).

Click to enlarge