Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Arabidopsis thaliana

Cyclebase periodic rank: 14,285



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 1.8638
P(reg)
= 0.5949
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MDJ2 [YNL328C] Saccharomyces cerevisiae 1,498 uncertain 0.071 0.001
Click to View Chart Preview Click for Info pam18 [SPAC824.06] Schizosaccharomyces pombe 4,505 uncertain 528.931 9.013
Click to View Chart Preview Click for Info F15A17_60 [AT5G03030] Arabidopsis thaliana 4,681 uncertain 0.096 1.111
Click to View Chart Preview Click for Info PAM18 [YLR008C] Saccharomyces cerevisiae 5,741 uncertain 84.43 1.011
Click to View Chart Preview Click for Info DNAJC15 [ENSG00000120675] Homo sapiens 10,600 uncertain 0.41 1.562
Click to View Chart Preview Click for Info At2g35795 Arabidopsis thaliana 13,504 uncertain 0.517 2.214

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of F11F8_29 (from probeset AT3G09700).

Click to enlarge