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Arabidopsis thaliana

Cyclebase periodic rank: 9,203



Gene Features:

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Degradation Signals:
  1. Dbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.0464
P(reg)
= 0.0782
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MEKK2 [ENSG00000169967] Homo sapiens 728 uncertain 2.87E-6 0.911
Click to View Chart Preview Click for Info cdc7 [SPBC21.06c] Schizosaccharomyces pombe 864 uncertain 6.29E-6 1.49E-4
Click to View Chart Preview Click for Info ANP2 [AT1G54960] Arabidopsis thaliana 987 uncertain 0.004 1.29
Click to View Chart Preview Click for Info At1g63700 Arabidopsis thaliana 1,367 uncertain 0.003 2.484
Click to View Chart Preview Click for Info mkh1 [SPAC1F3.02c] Schizosaccharomyces pombe 1,818 uncertain 1.02E-7 0.851
Click to View Chart Preview Click for Info ANP1 [AT1G09000] Arabidopsis thaliana 1,841 uncertain 0.023 0.939
Click to View Chart Preview Click for Info CDC15 [YAR019C] Saccharomyces cerevisiae 2,449 uncertain 0.397 0.009
Click to View Chart Preview Click for Info At1g07150 Arabidopsis thaliana 3,097 uncertain 1.053 2.06E-4
Click to View Chart Preview Click for Info STE11 [YLR362W] Saccharomyces cerevisiae 3,407 uncertain 0.042 1.95
Click to View Chart Preview Click for Info HSNIK [ENSG00000006062] Homo sapiens 4,372 uncertain 1.276 0.008
Click to View Chart Preview Click for Info BCK1 [YJL095W] Saccharomyces cerevisiae 4,805 uncertain 8.54 0.491
Click to View Chart Preview Click for Info F10M6.110 [AT4G32250] Arabidopsis thaliana 5,119 uncertain 0.056 2.515
Click to View Chart Preview Click for Info At5g66850 Arabidopsis thaliana 5,695 uncertain 1.669 0.004
Click to View Chart Preview Click for Info ANP3 [AT3G06030] Arabidopsis thaliana 5,951 uncertain 0.176 0.838
Click to View Chart Preview Click for Info At5g55090 Arabidopsis thaliana 6,606 uncertain 1.966 0.006
Click to View Chart Preview Click for Info F11C1_150 [AT3G50310] Arabidopsis thaliana 7,113 uncertain 1.625 0.033
Click to View Chart Preview Click for Info At5g67080 Arabidopsis thaliana 8,450 uncertain 2.923 0.008
Click to View Chart Preview Click for Info At2g18530 Arabidopsis thaliana 9,697 uncertain 0.396 0.949
Click to View Chart Preview Click for Info At2g41930 Arabidopsis thaliana 10,279 uncertain 0.684 0.587
Click to View Chart Preview Click for Info YSK4 [ENSG00000176601] Homo sapiens 10,414 uncertain 0.343 1.643
Click to View Chart Preview Click for Info MEKK [ENSG00000095015] Homo sapiens 10,580 uncertain 1.901 0.332
Click to View Chart Preview Click for Info At2g40580 Arabidopsis thaliana 11,501 uncertain 2.625 0.148
Click to View Chart Preview Click for Info At2g43930 Arabidopsis thaliana 11,730 uncertain 0.52 1.289
Click to View Chart Preview Click for Info MAP3Ka [AT1G53570] Arabidopsis thaliana 11,965 uncertain 0.628 1.1
Click to View Chart Preview Click for Info At2g34290 Arabidopsis thaliana 12,318 uncertain 2.576 0.209
Click to View Chart Preview Click for Info At4g26890 Arabidopsis thaliana 12,417 uncertain 1 0.723
Click to View Chart Preview Click for Info At2g32510 Arabidopsis thaliana 12,489 uncertain 1.142 0.626
Click to View Chart Preview Click for Info WRKY19 [AT4G12020] Arabidopsis thaliana 13,416 uncertain 0.681 1.546
Click to View Chart Preview Click for Info At2g30040 Arabidopsis thaliana 13,923 uncertain 0.864 1.365
Click to View Chart Preview Click for Info F9K21.250 [AT3G45670] Arabidopsis thaliana 14,891 uncertain 2 0.652
Click to View Chart Preview Click for Info At3g07980 Arabidopsis thaliana 15,622 uncertain 1.028 1.79
Click to View Chart Preview Click for Info At5g27510 Arabidopsis thaliana 15,633 uncertain 0.805 2.408
Click to View Chart Preview Click for Info At1g05100 Arabidopsis thaliana 16,023 uncertain 1.297 1.495
Click to View Chart Preview Click for Info KEG [AT5G13530] Arabidopsis thaliana 16,154 uncertain 0.904 2.381

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At2g40500 (from probeset AT2G40500).

Click to enlarge