Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Arabidopsis thaliana

Cyclebase periodic rank: 13,435



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.4582
P(reg)
= 2.5103
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info clr4 [SPBC428.08c] Schizosaccharomyces pombe 668 uncertain 8.78E-5 2.18E-8
Click to View Chart Preview Click for Info SUVH4 [AT5G13960] Arabidopsis thaliana 2,477 uncertain 0.017 2.278
Click to View Chart Preview Click for Info SUV39H2 [ENSG00000152455] Homo sapiens 3,157 uncertain 0.011 0.264
Click to View Chart Preview Click for Info DCLRE1C [ENSG00000152457] Homo sapiens 3,158 uncertain 0.011 0.264
Click to View Chart Preview Click for Info SUVH1 [AT5G04940] Arabidopsis thaliana 3,609 uncertain 0.048 1.551
Click to View Chart Preview Click for Info EHMT2 [ENSG00000137324] Homo sapiens 4,232 uncertain 0.012 0.725
Click to View Chart Preview Click for Info EHMT2 [ENSG00000206376] Homo sapiens 4,233 uncertain 0.012 0.725
Click to View Chart Preview Click for Info SETMAR [ENSG00000170364] Homo sapiens 7,426 uncertain 0.029 3.085
Click to View Chart Preview Click for Info SUVR2 [AT5G43990] Arabidopsis thaliana 7,896 uncertain 0.811 0.227
Click to View Chart Preview Click for Info SUV39H1 [ENSG00000101945] Homo sapiens 8,297 uncertain 0.46 0.345
Click to View Chart Preview Click for Info SUVH10 [AT2G05900] Arabidopsis thaliana 8,506 uncertain 1.554 0.1
Click to View Chart Preview Click for Info SUVH6 [AT2G22740] Arabidopsis thaliana 10,671 uncertain 0.276 1.988
Click to View Chart Preview Click for Info SUVH2 [AT2G33290] Arabidopsis thaliana 12,783 uncertain 2.254 0.292
Click to View Chart Preview Click for Info SUVH9 [AT4G13460] Arabidopsis thaliana 13,473 uncertain 0.514 2.214
Click to View Chart Preview Click for Info SUVR5 [AT2G23740] Arabidopsis thaliana 15,837 uncertain 0.808 2.53
Click to View Chart Preview Click for Info SUVR1 [AT1G04050] Arabidopsis thaliana 17,149 uncertain 1.458 1.757
Click to View Chart Preview Click for Info SUVH8 [AT2G24740] Arabidopsis thaliana 17,699 uncertain 2.594 1.021
Click to View Chart Preview Click for Info SUVH3 [AT1G73100] Arabidopsis thaliana 17,753 uncertain 1.251 2.499
Click to View Chart Preview Click for Info SUVR3 [AT3G03750] Arabidopsis thaliana 18,177 uncertain 1.356 2.529

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SUVH5 (from probeset AT2G35160).

Click to enlarge