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Arabidopsis thaliana

Cyclebase periodic rank: 7,048



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.1115
P(reg)
= 0.0963
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info APJ1 [YNL077W] Saccharomyces cerevisiae 667 uncertain 2.42E-4 3.12E-4
Click to View Chart Preview Click for Info SPBC1734.11 Schizosaccharomyces pombe 740 uncertain 2.25E-6 7.7E-6
Click to View Chart Preview Click for Info DNAJA1 [ENSG00000086061] Homo sapiens 839 uncertain 2.75E-4 0.025
Click to View Chart Preview Click for Info YDJ1 [YNL064C] Saccharomyces cerevisiae 1,234 uncertain 5.32E-4 0.037
Click to View Chart Preview Click for Info XDJ1 [YLR090W] Saccharomyces cerevisiae 1,734 uncertain 0.002 0.116
Click to View Chart Preview Click for Info ATJ11 [AT4G36040] Arabidopsis thaliana 2,211 uncertain 0.409 0.002
Click to View Chart Preview Click for Info SCJ1 [YMR214W] Saccharomyces cerevisiae 3,241 uncertain 0.128 0.403
Click to View Chart Preview Click for Info spj1 [SPBC1347.05c] Schizosaccharomyces pombe 3,708 uncertain 1.274 7.427
Click to View Chart Preview Click for Info xdj1 [SPBC405.06] Schizosaccharomyces pombe 4,010 uncertain 22.388 6.306
Click to View Chart Preview Click for Info F28P5.5 [AT1G72070] Arabidopsis thaliana 8,714 uncertain 1.486 0.118
Click to View Chart Preview Click for Info ATJ20 [AT4G13830] Arabidopsis thaliana 10,247 uncertain 0.641 0.627
Click to View Chart Preview Click for Info At3g13310 Arabidopsis thaliana 12,376 uncertain 2.464 0.228
Click to View Chart Preview Click for Info ATJ2 [AT5G22060] Arabidopsis thaliana 12,683 uncertain 0.644 1.334
Click to View Chart Preview Click for Info DNAJ [ENSG00000069345] Homo sapiens 14,119 uncertain 7.802 6.14
Click to View Chart Preview Click for Info ATJ3 [AT3G44110] Arabidopsis thaliana 14,380 uncertain 0.619 2.315

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At2g17880 (from probeset AT2G17880).

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