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Arabidopsis thaliana

Cyclebase periodic rank: 8,762



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.4582
P(reg)
= 0.1252
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SCPL48 [AT3G45010] Arabidopsis thaliana 129 G1 0.02 9.62E-6
Periodic
Click to View Chart Preview Click for Info YBR139W Saccharomyces cerevisiae 374 M 1.36E-12 0.004
Periodic
Click to View Chart Preview Click for Info cpy1 [SPAC19G12.10c] Schizosaccharomyces pombe 692 uncertain 3.49E-8 1.13E-4
Click to View Chart Preview Click for Info sxa2 [SPAC1296.03c] Schizosaccharomyces pombe 919 uncertain 0.002 4.39E-7
Click to View Chart Preview Click for Info SCPL21 [AT3G25420] Arabidopsis thaliana 962 uncertain 0.001 2.075
Click to View Chart Preview Click for Info SCPL42 [AT5G42240] Arabidopsis thaliana 1,033 uncertain 0.003 1.461
Click to View Chart Preview Click for Info ECS1 [AT2G24000] Arabidopsis thaliana 1,439 uncertain 0.235 8.44E-4
Click to View Chart Preview Click for Info SCPL7 [AT3G10450] Arabidopsis thaliana 1,698 uncertain 0.282 0.001
Click to View Chart Preview Click for Info PRC1 [YMR297W] Saccharomyces cerevisiae 2,467 uncertain 0.236 0.016
Click to View Chart Preview Click for Info kex1 [SPBC16G5.09] Schizosaccharomyces pombe 2,903 uncertain 1.055 0.035
Click to View Chart Preview Click for Info KEX1 [YGL203C] Saccharomyces cerevisiae 3,100 uncertain 0.021 1.594
Click to View Chart Preview Click for Info SCPL46 [AT2G33530] Arabidopsis thaliana 3,372 uncertain 0.307 0.121
Click to View Chart Preview Click for Info SCPL27 [AT3G07990] Arabidopsis thaliana 4,000 uncertain 0.443 0.104
Click to View Chart Preview Click for Info SCPL50 [AT1G15000] Arabidopsis thaliana 4,158 uncertain 0.307 0.207
Click to View Chart Preview Click for Info SCPL3 [AT1G73280] Arabidopsis thaliana 4,200 uncertain 2.229 4.35E-5
Click to View Chart Preview Click for Info SCPL16 [AT3G12220] Arabidopsis thaliana 4,204 uncertain 0.96 0.007
Click to View Chart Preview Click for Info SCPL8 [AT2G22990] Arabidopsis thaliana 4,917 uncertain 2.118 2.4E-4
Click to View Chart Preview Click for Info SCPL45 [AT1G28110] Arabidopsis thaliana 4,945 uncertain 0.972 0.025
Click to View Chart Preview Click for Info SCPL25 [AT3G02110] Arabidopsis thaliana 5,311 uncertain 0.072 1.971
Click to View Chart Preview Click for Info SCPL31 [AT1G11080] Arabidopsis thaliana 5,724 uncertain 2.341 5.45E-4
Click to View Chart Preview Click for Info SCPL26 [AT2G35780] Arabidopsis thaliana 5,820 uncertain 0.22 0.616
Click to View Chart Preview Click for Info SCPL4 [AT1G73310] Arabidopsis thaliana 5,826 uncertain 0.164 0.88
Click to View Chart Preview Click for Info SCPL5 [AT1G73290] Arabidopsis thaliana 6,207 uncertain 2.025 0.003
Click to View Chart Preview Click for Info SCPL52 [AT2G22960] Arabidopsis thaliana 7,252 uncertain 1.545 0.046
Click to View Chart Preview Click for Info SCPL24 [AT4G30610] Arabidopsis thaliana 7,340 uncertain 2.254 0.008
Click to View Chart Preview Click for Info SCPL13 [AT2G22980] Arabidopsis thaliana 7,364 uncertain 2.833 0.002
Click to View Chart Preview Click for Info SCPL6 [AT1G73270] Arabidopsis thaliana 7,565 uncertain 1.322 0.087
Click to View Chart Preview Click for Info SCPL28 [AT2G35770] Arabidopsis thaliana 8,105 uncertain 2.954 0.005
Click to View Chart Preview Click for Info SCPL41 [AT5G42230] Arabidopsis thaliana 8,297 uncertain 0.167 1.807
Click to View Chart Preview Click for Info SCPL20 [AT4G12910] Arabidopsis thaliana 8,598 uncertain 0.331 0.858
Click to View Chart Preview Click for Info SCPL17 [AT3G12203] Arabidopsis thaliana 9,084 uncertain 0.811 0.327
Click to View Chart Preview Click for Info CPVL [ENSG00000106066] Homo sapiens 9,426 uncertain 1.962 0.158
Click to View Chart Preview Click for Info SCPL30 [AT4G15100] Arabidopsis thaliana 9,615 uncertain 0.78 0.403
Click to View Chart Preview Click for Info SCPL19 [AT5G09640] Arabidopsis thaliana 10,516 uncertain 0.303 1.691
Click to View Chart Preview Click for Info SCPL35 [AT5G08260] Arabidopsis thaliana 10,540 uncertain 0.467 1.01
Click to View Chart Preview Click for Info SCPL23 [AT2G24010] Arabidopsis thaliana 11,004 uncertain 1.229 0.354
Click to View Chart Preview Click for Info SCPL47 [AT5G22980] Arabidopsis thaliana 11,742 uncertain 0.638 1.01
Click to View Chart Preview Click for Info SCPL49 [AT3G10410] Arabidopsis thaliana 11,814 uncertain 0.307 2.494
Click to View Chart Preview Click for Info CTSA [ENSG00000064601] Homo sapiens 12,092 uncertain 1.215 1.361
Click to View Chart Preview Click for Info SCPL54 [AT5G22960] Arabidopsis thaliana 12,639 uncertain 2.988 0.19
Click to View Chart Preview Click for Info SCPL33 [AT3G17180] Arabidopsis thaliana 13,507 uncertain 0.91 1.121
Click to View Chart Preview Click for Info SCPL36 [AT3G52000] Arabidopsis thaliana 13,762 uncertain 2.248 0.403
Click to View Chart Preview Click for Info SCPL34 [AT5G23210] Arabidopsis thaliana 14,427 uncertain 1.861 0.62
Click to View Chart Preview Click for Info SCPL10 [AT2G23000] Arabidopsis thaliana 15,855 uncertain 1.746 1.003
Click to View Chart Preview Click for Info SCPL18 [AT1G33540] Arabidopsis thaliana 15,994 uncertain 2.817 0.581
Click to View Chart Preview Click for Info SCPL32 [AT1G61130] Arabidopsis thaliana 17,319 uncertain 1.433 1.876
Click to View Chart Preview Click for Info SCPL44 [AT1G43780] Arabidopsis thaliana 18,918 uncertain 1.913 2.022
Click to View Chart Preview Click for Info SCPL43 [AT2G12480] Arabidopsis thaliana 19,882 uncertain 2.712 1.756
Click to View Chart Preview Click for Info SCPL29 [AT4G30810] Arabidopsis thaliana 20,480 uncertain 2.418 2.507

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SCPL38 (from probeset AT2G05850).

Click to enlarge