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[Viewing data for 'Menges-suc' only. See combined data for hsp88.1]

Arabidopsis thaliana

Cyclebase periodic rank: 778



Gene Features:

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Degradation Signals:
  1. KENbox
  2. PEST

Analysis Results

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Analysis Results of 'Menges-suc'

P(per)
= 0.6443
P(reg)
= 0.3747
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info swo1 [SPAC926.04c] Schizosaccharomyces pombe 399 uncertain 0.001 5.15E-15
Periodic
Click to View Chart Preview Click for Info HSC82 [YMR186W] Saccharomyces cerevisiae 1,071 uncertain 0.026 1.15E-4
Click to View Chart Preview Click for Info HSP82 [YPL240C] Saccharomyces cerevisiae 1,551 uncertain 0.722 6.18E-6
Click to View Chart Preview Click for Info At3g07770 Arabidopsis thaliana 3,719 uncertain 0.285 0.176
Click to View Chart Preview Click for Info ENSG00000126602 Homo sapiens 9,703 uncertain 0.562 0.646
Click to View Chart Preview Click for Info HSP81-1 [AT5G52640] Arabidopsis thaliana 11,088 uncertain 1.337 0.327
Click to View Chart Preview Click for Info hsp81.4 [AT5G56000] Arabidopsis thaliana 11,128 uncertain 0.644 0.821

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of hsp88.1 (from probeset AT2G04030).

Click to enlarge