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Arabidopsis thaliana

Cyclebase periodic rank: 19,365



Gene Features:

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Degradation Signals:
  1. Dbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.3839
P(reg)
= 1.7469
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info myo52 [SPCC1919.10c] Schizosaccharomyces pombe 220 G2 4.28E-24 0.005
Periodic
Click to View Chart Preview Click for Info MYO2 [YOR326W] Saccharomyces cerevisiae 535 S 6.87E-11 0.02
Periodic
Click to View Chart Preview Click for Info myo51 [SPBC2D10.14c] Schizosaccharomyces pombe 735 uncertain 2.65E-7 5.95E-5
Click to View Chart Preview Click for Info IQCB1 [ENSG00000173226] Homo sapiens 2,710 uncertain 0.001 1.117
Click to View Chart Preview Click for Info At2g20290 Arabidopsis thaliana 2,830 uncertain 0.022 2.31
Click to View Chart Preview Click for Info MYO4 [YAL029C] Saccharomyces cerevisiae 3,347 uncertain 0.424 0.162
Click to View Chart Preview Click for Info MYH10 [ENSG00000133026] Homo sapiens 3,502 uncertain 0.006 0.782
Click to View Chart Preview Click for Info atm3 [AT1G50360] Arabidopsis thaliana 4,067 uncertain 0.041 2.382
Click to View Chart Preview Click for Info At5g20450 Arabidopsis thaliana 4,730 uncertain 0.056 2.137
Click to View Chart Preview Click for Info At5g43900 Arabidopsis thaliana 7,596 uncertain 0.118 2.238
Click to View Chart Preview Click for Info T1G11.15 [AT1G04600] Arabidopsis thaliana 7,820 uncertain 1.229 0.115
Click to View Chart Preview Click for Info F20D22.7 [AT1G04160] Arabidopsis thaliana 8,439 uncertain 0.542 0.45
Click to View Chart Preview Click for Info MYO5C [ENSG00000128833] Homo sapiens 9,886 uncertain 0.783 0.516
Click to View Chart Preview Click for Info F4I10.130 [AT4G33200] Arabidopsis thaliana 10,249 uncertain 0.245 2.011
Click to View Chart Preview Click for Info FLJ10324 [ENSG00000157927] Homo sapiens 11,005 uncertain 1.461 0.565
Click to View Chart Preview Click for Info AT4g27370 Arabidopsis thaliana 11,699 uncertain 0.387 1.819
Click to View Chart Preview Click for Info F8D11.8 [AT1G42680] Arabidopsis thaliana 12,678 uncertain 0.399 2.366
Click to View Chart Preview Click for Info HA-2 [ENSG00000136286] Homo sapiens 12,834 uncertain 2.912 1.034
Click to View Chart Preview Click for Info At2g31900 Arabidopsis thaliana 13,269 uncertain 0.901 1.051
Click to View Chart Preview Click for Info At2g33240 Arabidopsis thaliana 13,396 uncertain 1.012 0.954
Click to View Chart Preview Click for Info At1g17580 Arabidopsis thaliana 16,227 uncertain 0.879 2.504
Click to View Chart Preview Click for Info atm4 [AT5G54280] Arabidopsis thaliana 17,184 uncertain 1.548 1.651
Click to View Chart Preview Click for Info At3g58160 Arabidopsis thaliana 17,231 uncertain 2.399 0.986
Click to View Chart Preview Click for Info AT1g08730 Arabidopsis thaliana 19,532 uncertain 2.554 1.69
Click to View Chart Preview Click for Info myo3 [AT3G19960] Arabidopsis thaliana 20,001 uncertain 2.796 1.749
Click to View Chart Preview Click for Info At5g20470 Arabidopsis thaliana 20,586 uncertain 2.594 2.419
Click to View Chart Preview Click for Info AT4g28710 Arabidopsis thaliana 20,635 uncertain 2.966 2.116

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of T22H22.1 (from probeset AT1G54560).

Click to enlarge