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Arabidopsis thaliana

Cyclebase periodic rank: 14,108



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.7214
P(reg)
= 0.6227
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info Hsp40 [ENSG00000132002] Homo sapiens 203 G2/M 5.45E-8 1.57E-4
Periodic
Click to View Chart Preview Click for Info SPCC63.13 Schizosaccharomyces pombe 216 M/G1 5.58E-10 6.7E-16
Periodic
Click to View Chart Preview Click for Info mug184 [SPBC1773.09c] Schizosaccharomyces pombe 773 uncertain 3.18E-5 1.58E-6
Click to View Chart Preview Click for Info psi1 [SPCC830.07c] Schizosaccharomyces pombe 905 uncertain 0.061 1.07E-11
Click to View Chart Preview Click for Info SPAC4G9.19 Schizosaccharomyces pombe 960 uncertain 2.33E-8 0.008
Click to View Chart Preview Click for Info AT4g10130 Arabidopsis thaliana 1,352 uncertain 0.004 2.014
Click to View Chart Preview Click for Info dph4 [SPAC926.05c] Schizosaccharomyces pombe 1,412 uncertain 0.006 7.13E-4
Click to View Chart Preview Click for Info At1g10350 Arabidopsis thaliana 1,525 uncertain 0.007 1.927
Click to View Chart Preview Click for Info JJJ3 [YJR097W] Saccharomyces cerevisiae 1,810 uncertain 0.004 0.085
Click to View Chart Preview Click for Info SIS1 [YNL007C] Saccharomyces cerevisiae 1,875 uncertain 2.621 4.56E-6
Click to View Chart Preview Click for Info DNAJB4 [ENSG00000162616] Homo sapiens 1,990 uncertain 0.024 0.02
Click to View Chart Preview Click for Info rsp1 [SPBC11B10.05c] Schizosaccharomyces pombe 2,370 uncertain 0.066 0.089
Click to View Chart Preview Click for Info At3g14200 Arabidopsis thaliana 3,169 uncertain 0.517 0.017
Click to View Chart Preview Click for Info ATXN10 [ENSG00000130638] Homo sapiens 3,653 uncertain 0.004 1.299
Click to View Chart Preview Click for Info At3g08970 Arabidopsis thaliana 3,810 uncertain 0.051 1.599
Click to View Chart Preview Click for Info JJJ2 [YJL162C] Saccharomyces cerevisiae 4,073 uncertain 0.336 1.596
Click to View Chart Preview Click for Info T7O23.16 [AT1G44160] Arabidopsis thaliana 4,191 uncertain 1.031 0.004
Click to View Chart Preview Click for Info pi041 [SPBC17A3.05c] Schizosaccharomyces pombe 4,533 uncertain 867.877 3.862
Click to View Chart Preview Click for Info HLJ1 [YMR161W] Saccharomyces cerevisiae 4,565 uncertain 0.705 2.9
Click to View Chart Preview Click for Info DNAJB3 [ENSG00000178836] Homo sapiens 4,986 uncertain 1.153 0.015
Click to View Chart Preview Click for Info At2g20550 Arabidopsis thaliana 5,477 uncertain 1.269 0.014
Click to View Chart Preview Click for Info DNAJB8 [ENSG00000179407] Homo sapiens 5,509 uncertain 0.115 0.214
Click to View Chart Preview Click for Info DNAJC18 [ENSG00000170464] Homo sapiens 6,809 uncertain 2.592 0.024
Click to View Chart Preview Click for Info At5g25530 Arabidopsis thaliana 6,953 uncertain 2.297 0.004
Click to View Chart Preview Click for Info At2g20560 Arabidopsis thaliana 7,372 uncertain 1.653 0.039
Click to View Chart Preview Click for Info At1g71000 Arabidopsis thaliana 7,965 uncertain 2.022 0.032
Click to View Chart Preview Click for Info At5g16650 Arabidopsis thaliana 8,186 uncertain 0.598 0.371
Click to View Chart Preview Click for Info At5g59610 Arabidopsis thaliana 8,339 uncertain 2.152 0.035
Click to View Chart Preview Click for Info At3g58020 Arabidopsis thaliana 9,923 uncertain 1.006 0.32
Click to View Chart Preview Click for Info F14G9.9 [AT1G56300] Arabidopsis thaliana 9,975 uncertain 2.845 0.052
Click to View Chart Preview Click for Info F23H11.4 [AT1G59725] Arabidopsis thaliana 10,297 uncertain 0.706 0.568
Click to View Chart Preview Click for Info F20O9.160 [AT4G28480] Arabidopsis thaliana 11,085 uncertain 0.372 1.57
Click to View Chart Preview Click for Info At2g33735 Arabidopsis thaliana 11,361 uncertain 0.307 2.163
Click to View Chart Preview Click for Info KIF18B [ENSG00000186185] Homo sapiens 11,454 uncertain 2.247 0.496
Click to View Chart Preview Click for Info DNAJB14 [ENSG00000164031] Homo sapiens 12,013 uncertain 1.361 1.162
Click to View Chart Preview Click for Info F28O9.190 [AT3G57340] Arabidopsis thaliana 12,312 uncertain 0.433 1.92
Click to View Chart Preview Click for Info ATJ49 [AT5G49060] Arabidopsis thaliana 13,687 uncertain 2.303 0.38
Click to View Chart Preview Click for Info T17J13.150 [AT3G62190] Arabidopsis thaliana 13,892 uncertain 0.529 2.436
Click to View Chart Preview Click for Info HSJ1 [ENSG00000135924] Homo sapiens 13,922 uncertain 3.682 3.31
Click to View Chart Preview Click for Info At3g08910 Arabidopsis thaliana 14,937 uncertain 0.709 2.314
Click to View Chart Preview Click for Info ATJ72 [AT2G41000] Arabidopsis thaliana 15,084 uncertain 0.706 2.419
Click to View Chart Preview Click for Info At2g42080 Arabidopsis thaliana 16,590 uncertain 1.077 2.165
Click to View Chart Preview Click for Info At5g64360 Arabidopsis thaliana 18,492 uncertain 1.632 2.205
Click to View Chart Preview Click for Info T10O8_100 [AT5G01390] Arabidopsis thaliana 18,586 uncertain 1.709 2.131
Click to View Chart Preview Click for Info F16P17.12 [AT1G62970] Arabidopsis thaliana 18,982 uncertain 1.957 2
Click to View Chart Preview Click for Info T17F15.190 [AT3G47940] Arabidopsis thaliana 20,755 uncertain 2.65 2.568
Click to View Chart Preview Click for Info T8F5.5 [AT1G65280] Arabidopsis thaliana 20,819 uncertain 2.839 2.46

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At1g11040 (from probeset AT1G11040).

Click to enlarge