Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Arabidopsis thaliana

Cyclebase periodic rank: 517



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.0233
P(reg)
= 0.0538
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC26H5.07c Schizosaccharomyces pombe 629 uncertain 1.32E-14 0.033
Click to View Chart Preview Click for Info At2g01070 Arabidopsis thaliana 1,437 uncertain 0.004 2.251
Click to View Chart Preview Click for Info PTM1 [YKL039W] Saccharomyces cerevisiae 2,043 uncertain 0.006 0.133
Click to View Chart Preview Click for Info YHL017W Saccharomyces cerevisiae 3,717 uncertain 0.13 1.563
Click to View Chart Preview Click for Info SPBC18A7.02c Schizosaccharomyces pombe 3,729 uncertain 1.526 8.082
Click to View Chart Preview Click for Info At1g72480 Arabidopsis thaliana 16,326 uncertain 1.474 1.385
Click to View Chart Preview Click for Info AT1g61670 Arabidopsis thaliana 20,214 uncertain 2.353 2.336

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of At1g10980 (from probeset AT1G10980).

Click to enlarge