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Arabidopsis thaliana

Cyclebase periodic rank: 4,114



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1672
P(reg)
= 0.4491
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info myo3 [SPAC4A8.05c] Schizosaccharomyces pombe 49 G2/M 5.5E-39 4.03E-16
Periodic
Click to View Chart Preview Click for Info MYO1 [YHR023W] Saccharomyces cerevisiae 253 G2 2.28E-10 3.12E-8
Periodic
Click to View Chart Preview Click for Info myo2 [SPCC645.05c] Schizosaccharomyces pombe 2,738 uncertain 4.28E-4 2.343
Click to View Chart Preview Click for Info MYH10 [ENSG00000133026] Homo sapiens 3,502 uncertain 0.006 0.782
Click to View Chart Preview Click for Info TIAF1 [ENSG00000196535] Homo sapiens 7,531 uncertain 0.098 0.998
Click to View Chart Preview Click for Info MYH1 [ENSG00000109061] Homo sapiens 8,966 uncertain 0.136 1.742
Click to View Chart Preview Click for Info MYH8 [ENSG00000133020] Homo sapiens 10,216 uncertain 1.062 0.465
Click to View Chart Preview Click for Info At3g05830 Arabidopsis thaliana 17,792 uncertain 2.096 1.359
Click to View Chart Preview Click for Info WAP [AT2G34730] Arabidopsis thaliana 18,019 uncertain 1.601 1.992

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of F14J9.13 (from probeset AT1G09470).

Click to enlarge