Cyclebase offers several types of data available for download. If you are looking for how to find and download data, please consult the FAQ. Cyclebase will only distribute expression-profile data if the original authors have given their consent. Use of processed data requires that you cite the original authors as well as Cyclebase. All data have been processed as described here. Each exported type is offered in Tab-Delimited format.
Entire organism data-files consist of overall organism information and Cyclebase analysis-results. The files contain both the combined analysis (across all available experiments) and the analysis of each individual experiment.
Downloads are available with for all genes and also for only those genes that Cyclebase has deemed periodic. The format of the download with only periodic genes is the same as the full gene download.
The following figure depicts a simple Tab-Delimited organism analysis:
An entire experiment data-file consists of overall experiment information, Cyclebase analysis-results, and all of the processed time-series expression-profiles for that experiment.
For the experiments that Cyclebase has not been given permission to distribute, downloaded files will only contain the overall experiment information and Cyclebase analysis-results. These 'confidential' experiment files will be formated exactly like the 'full' files, but will not contain the processed time-series expression-profiles.
The following figure depicts a simple Tab-Delimited experiment:
An individual gene export contains the gene's 'global' analysis-results, all available experiment analysis-results, and expression profiles. If multiple probesets exist for a gene, data for the probeset being viewed will be downloaded. Note that the default probeset displayed for a gene that multiple probesets target is the one with the best rank, but the option to select the additional probesets is given on the gene details page.
The figure below depicts a simple example of an exported gene: