Cyclebase.org

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  • Gene Name
  • BLAST
Example searches:

Search results for 'organism 'Saccharomyces cerevisiae''
Results 1 - 25 of 6114 results

Gene Name Organism Rank Rank Ascending Sort Peaktime P(per) P(reg)
Gene Info Icon MNN1 [YER001W] Saccharomyces cerevisiae 1 S 4.65E-30 6.31E-11
Periodic
Gene Info Icon CSI2 [YOL007C] Saccharomyces cerevisiae 2 G1/S 1.2E-27 1.28E-11
Periodic
Gene Info Icon GAS3 [YMR215W] Saccharomyces cerevisiae 3 S/G2 7.03E-26 1.6E-12
Periodic
Gene Info Icon HHO1 [YPL127C] Saccharomyces cerevisiae 4 S 4.62E-27 3.57E-11
Periodic
Gene Info Icon HTB2 [YBL002W] Saccharomyces cerevisiae 5 S 1.08E-24 2.27E-13
Periodic
Gene Info Icon RFA1 [YAR007C] Saccharomyces cerevisiae 6 G1 1.56E-26 2.72E-10
Periodic
Gene Info Icon POL30 [YBR088C] Saccharomyces cerevisiae 7 G1 2.76E-24 2.38E-12
Periodic
Gene Info Icon CLN2 [YPL256C] Saccharomyces cerevisiae 8 G1 2.04E-24 3.8E-12
Periodic
Gene Info Icon SVS1 [YPL163C] Saccharomyces cerevisiae 9 S 3.86E-23 2.37E-13
Periodic
Gene Info Icon HTB1 [YDR224C] Saccharomyces cerevisiae 10 S 7.36E-24 1.3E-12
Periodic
Gene Info Icon MCD1 [YDL003W] Saccharomyces cerevisiae 11 G1 1.51E-24 6.56E-12
Periodic
Gene Info Icon HTA2 [YBL003C] Saccharomyces cerevisiae 12 S 2E-22 1.51E-13
Periodic
Gene Info Icon HHT1 [YBR010W] Saccharomyces cerevisiae 13 S 1.66E-22 1.22E-12
Periodic
Gene Info Icon PRY2 [YKR013W] Saccharomyces cerevisiae 14 G1/S 1.91E-22 1.13E-12
Periodic
Gene Info Icon TOS4 [YLR183C] Saccharomyces cerevisiae 15 G1/S 9.02E-24 2.79E-11
Periodic
Gene Info Icon MSH6 [YDR097C] Saccharomyces cerevisiae 16 G1 5.72E-25 6.82E-10
Periodic
Gene Info Icon HTA1 [YDR225W] Saccharomyces cerevisiae 17 S 2.86E-22 1.38E-12
Periodic
Gene Info Icon YBR071W Saccharomyces cerevisiae 18 G1 9.61E-23 8.17E-12
Periodic
Gene Info Icon CRH1 [YGR189C] Saccharomyces cerevisiae 19 G1 7.44E-23 1.58E-11
Periodic
Gene Info Icon HHF2 [YNL030W] Saccharomyces cerevisiae 20 S 2.78E-21 1.9E-12
Periodic
Gene Info Icon YBR089W Saccharomyces cerevisiae 21 G1 1.46E-22 4.99E-11
Periodic
Gene Info Icon HSP150 [YJL159W] Saccharomyces cerevisiae 22 M/G1 4.07E-21 2.66E-12
Periodic
Gene Info Icon AXL2 [YIL140W] Saccharomyces cerevisiae 23 G1/S 1.12E-22 1.05E-10
Periodic
Gene Info Icon TOS6 [YNL300W] Saccharomyces cerevisiae 24 S 1.2E-19 1.38E-13
Periodic
Gene Info Icon SML1 [YML058W] Saccharomyces cerevisiae 25 G2 3.14E-21 7.73E-12
Periodic
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Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

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P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

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P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

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Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

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Predicted Periodic

This gene is predicted periodic based on its rank.

E-value Information

The Expect (E) Value describes the number of genes one can expect to see by change when searching for a sequence of a particular size. A small E-value therefore implies a significant match. In Cyclebase, this value is calculated by either BLASTP or BLASTX (mouseover each value to see which).

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E-value Information

The Expect (E) Value describes the number of genes one can expect to see by change when searching for a sequence of a particular size. A small E-value therefore implies a significant match. In Cyclebase, this value is calculated by either BLASTP or BLASTX (mouseover each value to see which).

E-value calculated by BLASTP

E-value calculated by BLASTX