Cyclebase.org

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Search results for 'organism 'Arabidopsis thaliana''
Results 1 - 25 of 20945 results

Gene Name Organism Rank Rank Ascending Sort Peaktime P(per) P(reg)
Gene Info Icon At1g18250 Arabidopsis thaliana 1 G1 5E-5 4.33E-5
Periodic
Gene Info Icon H2AV [AT3G54560] Arabidopsis thaliana 2 S 3.1E-5 4.14E-4
Periodic
Gene Info Icon AT4g21820 Arabidopsis thaliana 3 M/G1 7.4E-5 9.89E-5
Periodic
Gene Info Icon AT5g23420 Arabidopsis thaliana 4 S 3.4E-5 6.28E-4
Periodic
Gene Info Icon At4g28430 Arabidopsis thaliana 5 M/G1 1.64E-4 3.32E-5
Periodic
Gene Info Icon MJM20.1 [AT3G12870] Arabidopsis thaliana 6 M/G1 4.89E-4 7.21E-6
Periodic
Gene Info Icon F9D16.270 [AT4G23800] Arabidopsis thaliana 7 G1 3.87E-4 3.17E-5
Periodic
Gene Info Icon CSLD5 [AT1G02730] Arabidopsis thaliana 8 G1 7.8E-4 9.36E-6
Periodic
Gene Info Icon At5g59870 Arabidopsis thaliana 9 S 9.9E-5 7.53E-4
Periodic
Gene Info Icon BCAT6 [AT1G50110] Arabidopsis thaliana 10 G1 2.14E-4 1.96E-4
Periodic
Gene Info Icon AT4g05190 Arabidopsis thaliana 11 G1 4.52E-4 4.88E-5
Periodic
Gene Info Icon At5g61000 Arabidopsis thaliana 12 S 5.9E-5 0.003
Periodic
Gene Info Icon At4g27230 Arabidopsis thaliana 13 S 3.1E-5 0.019
Periodic
Gene Info Icon At2g38160 Arabidopsis thaliana 14 M/G1 3.53E-4 1.99E-4
Periodic
Gene Info Icon CYCB1-4 [AT2G26760] Arabidopsis thaliana 15 G1 0.001 2.05E-5
Periodic
Gene Info Icon At2g38810 Arabidopsis thaliana 16 S 1.89E-4 0.001
Periodic
Gene Info Icon dl3485w [AT4G14890] Arabidopsis thaliana 17 M 1.2E-5 0.089
Periodic
Gene Info Icon At5g55520 Arabidopsis thaliana 18 G1 0.002 9.5E-6
Periodic
Gene Info Icon F21M11.4 [AT1G04020] Arabidopsis thaliana 19 S 1.86E-4 0.002
Periodic
Gene Info Icon T21H19_170 [AT5G16250] Arabidopsis thaliana 20 G1 0.001 6.65E-5
Periodic
Gene Info Icon PSBQ2 [AT4G05180] Arabidopsis thaliana 21 M/G1 8.08E-4 1.08E-4
Periodic
Gene Info Icon ORC6 [AT1G26840] Arabidopsis thaliana 22 S 0.001 7.42E-5
Periodic
Gene Info Icon AT4g02800 Arabidopsis thaliana 23 G1 0.001 5.14E-5
Periodic
Gene Info Icon At2g43570 Arabidopsis thaliana 24 S 3.53E-4 7.28E-4
Periodic
Gene Info Icon F14P22.240 [AT3G58650] Arabidopsis thaliana 25 M/G1 0.003 9.73E-6
Periodic
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Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

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P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

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P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

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Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

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Predicted Periodic

This gene is predicted periodic based on its rank.

E-value Information

The Expect (E) Value describes the number of genes one can expect to see by change when searching for a sequence of a particular size. A small E-value therefore implies a significant match. In Cyclebase, this value is calculated by either BLASTP or BLASTX (mouseover each value to see which).

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E-value Information

The Expect (E) Value describes the number of genes one can expect to see by change when searching for a sequence of a particular size. A small E-value therefore implies a significant match. In Cyclebase, this value is calculated by either BLASTP or BLASTX (mouseover each value to see which).

E-value calculated by BLASTP

E-value calculated by BLASTX